Professor | 曹晨 | 数字化转型顾问

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Name	曹晨
Contact Information	caochen@njmu.edu.cn
Language ability	英语, 中文
Province	江苏

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Name

曹晨

Contact Information

caochen@njmu.edu.cn

Language ability

英语, 中文

Province

江苏

University/Lab Affiliation and Title	南京医科大学
Faculty	Biomedical Engineering and Informatics
Academic Background & Achievements	2006.9–2010.6 医学学士: 吉林大学 2011.9–2013.6 医学硕士: 吉林大学 2013.9–2016.6 工学博士（计算机科学与技术）: 吉林大学
Work Experience	2010.7–2011.5 - 上海药明康德新药开发有限公司 - 药物合成助理研究员 2017.2–2021.1 - 加拿大卡尔加里大学Cumming医学院 - 博士后 2021.2–2021.12 - 电子科技大学长三角研究院 - 特聘副研究员
Awards	2024年: 中国大学生计算机设计大赛江苏省特等奖（指导教师排名：1/2） 2024年: 中国大学生计算机设计大赛国家级二等奖（指导教师排名：1/2） 2024年: 江苏省优秀指导教师 2024年: 江苏省大学生生物医学工程创新设计竞赛江苏省三等奖（指导教师排名：1/1）

University/Lab Affiliation and Title

南京医科大学

Faculty

Biomedical Engineering and Informatics

Academic Background & Achievements

2006.9–2010.6 医学学士: 吉林大学
2011.9–2013.6 医学硕士: 吉林大学
2013.9–2016.6 工学博士（计算机科学与技术）: 吉林大学

Work Experience

2010.7–2011.5 - 上海药明康德新药开发有限公司 - 药物合成助理研究员
2017.2–2021.1 - 加拿大卡尔加里大学Cumming医学院 - 博士后
2021.2–2021.12 - 电子科技大学长三角研究院 - 特聘副研究员

Awards

2024年: 中国大学生计算机设计大赛江苏省特等奖（指导教师排名：1/2）
2024年: 中国大学生计算机设计大赛国家级二等奖（指导教师排名：1/2）
2024年: 江苏省优秀指导教师
2024年: 江苏省大学生生物医学工程创新设计竞赛江苏省三等奖（指导教师排名：1/1）

Areas of Focus	生物信息学和计算生物学
Publications	Leveraging Random Effects in Cistrome‐Wide Association Studies for Decoding the Genetic Determinants of Prostate Cancer, Shao M, Tian M, Chen K, Jiang H, Zhang S, Li Z, Shen Y, Chen F, Shen B, Cao C, Gu N, 2024 PGS-Depot: a comprehensive resource for polygenic scores constructed by summary statistics based methods, Cao C, Zhang S, Wang J, Tian M, Ji X, Huang D, Yang S, Gu N, 2024 RAVAR: a curated repository for rare variant–trait associations, Cao C, Shao M, Zuo C, Kwok D, Liu L, Ge Y, Zhang Z, Cui F, Chen M, Fan R, Ding Y, Jiang H, Wang G, Zou Q, 2024 EHR-HGCN: An Enhanced Hybrid Approach for Text Classification Using Heterogeneous Graph Convolutional Networks in Electronic Health Records, Wang G, Lou X, Guo F, Kwok D, Cao C, 2023 webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study, Cao C, Wang J, Kwok D, Cui F, Zhang Z, Zhao D, Li MJ, Zou Q, 2022 WgLink: reconstructing whole-genome viral haplotypes using L0 L1 regularization, Cao C, Greenberg M, Long Q, 2021 kTWAS: integrating kernel machine with transcriptome-wide association studies improves statistical power and reveals novel genes, Cao C, Kwok D, Edie S, Li Q, Ding B, Kossinna P, Campbell S, Wu J, Greenberg M, Long Q, 2021 Reconstruction of microbial haplotypes by integration of statistical and physical linkage in scaffolding, Cao C, He J, Mak L, Perera D, Kwok D, Wang J, Li M, Mourier T, Gavriliuc S, Greenberg M, Morrissy AS, Sycuro LK, Yang G, Jeffares DC, Long Q, 2021 Power analysis of transcriptome-wide association study: Implications for practical protocol choice, Cao C, Ding B, Li Q, Kwok D, Wu J, Long Q, 2021 PRESM: personalized reference editor for somatic mutation discovery in cancer genomics, Cao C, Mak L, Jin G, Gordon P, Ye K, Long Q, 2019

Areas of Focus

生物信息学和计算生物学

Publications

Leveraging Random Effects in Cistrome‐Wide Association Studies for Decoding the Genetic Determinants of Prostate Cancer, Shao M, Tian M, Chen K, Jiang H, Zhang S, Li Z, Shen Y, Chen F, Shen B, Cao C*, Gu N*, 2024
PGS-Depot: a comprehensive resource for polygenic scores constructed by summary statistics based methods, Cao C, Zhang S, Wang J, Tian M, Ji X, Huang D, Yang S*, Gu N, 2024
RAVAR: a curated repository for rare variant–trait associations, Cao C*, Shao M, Zuo C, Kwok D, Liu L, Ge Y, Zhang Z, Cui F, Chen M, Fan R, Ding Y, Jiang H, Wang G*, Zou Q*, 2024
EHR-HGCN: An Enhanced Hybrid Approach for Text Classification Using Heterogeneous Graph Convolutional Networks in Electronic Health Records, Wang G, Lou X, Guo F, Kwok D, Cao C*, 2023
webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study, Cao C, Wang J, Kwok D, Cui F, Zhang Z, Zhao D, Li MJ, Zou Q*, 2022
WgLink: reconstructing whole-genome viral haplotypes using L0 L1 regularization, Cao C, Greenberg M, Long Q*, 2021
kTWAS: integrating kernel machine with transcriptome-wide association studies improves statistical power and reveals novel genes, Cao C, Kwok D, Edie S, Li Q, Ding B, Kossinna P, Campbell S, Wu J, Greenberg M, Long Q*, 2021
Reconstruction of microbial haplotypes by integration of statistical and physical linkage in scaffolding, Cao C, He J, Mak L, Perera D, Kwok D, Wang J, Li M, Mourier T, Gavriliuc S, Greenberg M, Morrissy AS, Sycuro LK, Yang G, Jeffares DC, Long Q*, 2021
Power analysis of transcriptome-wide association study: Implications for practical protocol choice, Cao C, Ding B, Li Q, Kwok D, Wu J*, Long Q*, 2021
PRESM: personalized reference editor for somatic mutation discovery in cancer genomics, Cao C, Mak L, Jin G, Gordon P, Ye K, Long Q*, 2019

生物信息学计算生物学人工智能统计方法疾病机制基因组学转录组学数据分析算法开发生物医学研究

刘云 - 南京医科大学

汪强虎 - 南京医科大学

吕飒丽 - 南京医科大学

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