High-throughput transcriptional profiling of perturbations by Panax ginseng saponins and Panax notoginseng saponins using TCM-seq, Junyun Cheng, Jie Chen, Jie Liao, Tianhao Wang, Xin Shao, Jinbo Long, Penghui Yang, Anyao Li, Zheng Wang, Xiaoyan Lu, Xiaohui Fan, 2023
Massively Parallel CRISPR-based Genetic Perturbation Screening at Single-cell Resolution, Junyun Cheng, Gaole Lin, Tianhao Wang, Yunzhu Wang, Wenbo Guo, Jie Liao, Penghui Yang, Jie Chen, Xin Shao, Xiaoyan Lu, Ling Zhu, Yi Wang, Xiaohui Fan, 2023
Biopsy-based single cell transcriptomics reveals MAIT cells as potential targets for controlling fibrosis-related liver inflammation due to chronic hepatitis-B infection, Li Shao, Hong Zhao, Rongfang Guo, Jinlin Cheng, Xiaoyan Lu, Xiaohui Fan, 2022
De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution, Jie Liao, Jingyang Qian, Yin Fang, Zhuo Chen, Xiang Zhuang, Ningyu Zhang, Xin Shao, Haihong Yang, Penghui Yang, Junyun Cheng, Yang Hu, Yining Hu, Lingqi Yu, Jinlu Zhang, Xiaoyan Lu, Li Shao, Dan Wu, Yue Gao, Huajun Chen, Xiaohui Fan, 2022
Knowledge-graph-based cell-cell communication inference for spatially-resolved transcriptomic data with SpaTalk, Xin Shao, Chengyu Li, Haihong Yang, Xiaoyan Lu, Jie Liao, Jingyang Qian, Kai Wang, Junyun Cheng, Penghui Yang, Huajun Chen, Xiao Xu, Xiaohui Fan, 2022
Tracing the cell-type-specific modules of immune responses during COVID-19 progression using scDisProcema, Anyao Li, Jihong Yang, Jingyang Qian, Xin Shao, Jie Liao, Xiaoyan Lu, Xiaohui Fan, 2022
Multimodal integrated strategy for discovery and identification of Q-marker of traditional Chinese medicine, Xiaoyan Lu, Yanyan Jin, Yuzhen Wang, Yunlong Chen, Xiaohui Fan, 2022
Revealing the Transcriptional Heterogeneity of Organ-Specific Metastasis in Human Gastric Cancer Using Single-cell RNA Sequencing, Haiping Jiang, Dingyi Yu, Penghui Yang, Rongfang Guo, Mei Kong, Yuan Gao, Xiongfei Yu, Xiaoyan Lu, Xiaohui Fan, 2022
Single-cell RNA sequencing reveals the temporal diversity and dynamics of cardiac immunity after myocardial infarction, Kaiyu Jin, Shan Gao, Penghui Yang, Rongfang Guo, Dan Li, Yunsha Zhang, Xiaoyan Lu, Guanwei Fan, Xiaohui Fan, 2022
scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network, Xin Shao, Haihong Yang, Xiang Zhuang, Jie Liao, Penghui Yang, Junyun Chen, Xiaoyan Lu, Huajun Chen, Xiaohui Fan, 2021
MetaGeneBank: A Standardized Database to Study Deep Sequenced Metagenomic Data from Human Fecal Specimen, Li Shao, Jie Liao, Jingyang Qian, Wenbin Chen, Xiaohui Fan, 2021
Multiplexing Methods for Simultaneous Large-scale Transcriptomic Profiling of Samples at Single-cell Resolution, Junyun Cheng, Jie Liao, Xin Shao, Xiaoyan Lu, Xiaohui Fan, 2021
Identify differential genes and cell subclusters from time-series scRNA-seq data using scTITANS, Li Shao, Rui Xue, Xiaoyan Lu, Jie Liao, Xin Shao, Xiaohui Fan, 2021
A single-cell transcriptomic atlas characterizes Liver Non-Parenchymal Cells in healthy and diseased mice, Zheng Wang, Jingyang Qian, Xiaoyan Lu, Ping Zhang, Rongfang Guo, He Lou, Shuying Zhang, Jihong Yang, Xiaohui Fan, 2021
Genome-wide DNA methylation alterations induced by subacute and subchronic exposure to food-grade nanosilica in mice, Xiaoyan Lu, Junying Li, Lou He, Zeya Cao, Xiaohui Fan, 2021
Uncovering an Organ's Molecular Architecture at Single-cell Resolution by Spatially Resolved Transcriptomics, Jie Liao, Xiaoyan Lu, Xin Shao, Ling Zhu, Xiaohui Fan, 2021
Babaodan controls excessive immune responses and may represent a cytokine-targeted agent suitable for COVID-19 treatment, Jing Qian, Hangdi Xu, Dongqing Lv, Wei Liu, Enguo Chen, Yong Zhou, Yi Wang, Kejing Ying, Xiaohui Fan, 2021
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research, Xin Shao, Yi Wang, Xiaoyan Lu, Yang Hu, Jie Liao, Junying Li, Xuechun Chen, YunruYu, Ni Ai, Meidan Ying, Xiaohui Fan, 2020
Chemical constituents of Panax ginseng and Panax notoginseng explain why they differ in therapeutic efficacy, Hanbing Liu, Xiaoyan Lu, Yang Hu, Xiaohui Fan, 2020
CellTalkDB: A manually curated database of ligand-receptor interactions in human and mouse, Xin Shao, Jie Liao, Chengyu Li, Xiaoyan Lu, Junyun Cheng, Xiaohui Fan, 2020
New Avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data, Xin Shao, Xiaoyan Lu, Jie Liao, Huajun Chen, Xiaohui Fan, 2020
scCATCH: Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data, Xin Shao, Jie Liao, Xiaoyan Lu, Rui Xue, Ni Ai, Xiaohui Fan, 2020
Prediction of Adverse Drug Reactions by Combining Biomedical Tripartite Network and Graph Representation Model, Rui Xue, Jie Liao, Xin Shao, Ke Han, Jingbo Long, Li Shao, Ni Ai, Xiaohui Fan, 2020
Area of Focus
Genetic Engineering | Drug Development | Application | Biotransformation | Natural Products | Research | Pharmaceutical | Technology | Innovation | Biomedical
