Professor | Junchao Shi | Asia Growth Partners

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Name	Junchao Shi
Contact Information	shijc@big.ac.cn
Language ability	English, Chinese
Province	Beijing

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Name

Junchao Shi

Contact Information

shijc@big.ac.cn

Language ability

English, Chinese

Province

Beijing

University/Lab Affiliation and Title	University of Chinese Academy of Sciences
Faculty	Life Sciences
Academic Background & Achievements	2019-01--2021-06 PhD in Genetics, Genomics, and Bioinformatics: University of California, Riverside 2016-08--2019-01 PhD Candidate in Cell and Molecular Biology: University of Nevada, Reno 2013-09--2016-07 MSc in Developmental Biology: University of Chinese Academy of Sciences 2008-09--2012-06 BSc in Biotechnology (Animal): Jilin University
Work Experience	2023-04~2023-07 - University of Utah - Postdoctoral Researcher 2021-08~2023-03 - University of California, Riverside - Postdoctoral Researcher 2012-06~2013-09 - Institute of Zoology, Chinese Academy of Sciences - Research Assistant

University/Lab Affiliation and Title

University of Chinese Academy of Sciences

Faculty

Life Sciences

Academic Background & Achievements

2019-01--2021-06 PhD in Genetics, Genomics, and Bioinformatics: University of California, Riverside
2016-08--2019-01 PhD Candidate in Cell and Molecular Biology: University of Nevada, Reno
2013-09--2016-07 MSc in Developmental Biology: University of Chinese Academy of Sciences
2008-09--2012-06 BSc in Biotechnology (Animal): Jilin University

Work Experience

2023-04~2023-07 - University of Utah - Postdoctoral Researcher
2021-08~2023-03 - University of California, Riverside - Postdoctoral Researcher
2012-06~2013-09 - Institute of Zoology, Chinese Academy of Sciences - Research Assistant

Areas of Focus	Non-coding RNA Genomics Epigenetics Early Embryonic Development
Publications	PANDORA-Seq unveils the hidden small noncoding RNA landscape in atherosclerosis of LDL receptor-deficient mice, Hernandez, Rebecca, Shi, Junchao, Liu, Jingwei, Li, Xiuchun, Wu, Jake, Zhao, Linlin, Zhou, Tong, Chen, Qi, Zhou, Changcheng, 2023 Paternal phthalate exposure-elicited offspring metabolic disorders are associated with altered sperm small RNAs in mice, Jingwei Liu, Junchao Shi, Rebecca Hernandez, Xiuchun Li, Pranav Konchadi, Yuma Miyake, Qi Chen, Tong Zhou, Changcheng Zhou, 2023 Exploring the expanding universe of small RNAs, Shi, Junchao, Zhou, Tong, Chen, Qi, 2022 Noncoding RNAs: biology and applications-a Keystone Symposia report, Cable, Jennifer, Heard, Edith, Hirose, Tetsuro, Prasanth, Kannanganattu, V, Chen, LingLing, Henninger, Jonathan E, Quinodoz, Sofia A, Spector, David L, Diermeier, Sarah D, Porman, Allison M, Kumar, Dhiraj, Feinberg, Mark W, Shen, Xiaohua, Unfried, Juan Pablo, Johnson, Rory, Chen, ChunKan, Wilusz, Jeremy E, Lempradl, Adelheid, McGeary, Sean E, Wahba, Lamia, Pyle, Anna Marie, Hargrove, Amanda E, Simon, Matthew D, Marcia, Marco, Przanowska, Roza K, Chang, Howard Y, Jaffrey, Samie R, Contreras, Lydia M, Chen, Qi, Shi, Junchao, Mendell, Joshua T, He, Lin, Song, Erwei, Rinn, John L, Lalwani, Mukesh Kumar, Kalem, Murat Can, Chuong, Edward B, Maquat, Lynne E, Liu, Xuhang, 2021 Cooperation-based sperm clusters mediate sperm oviduct entry and fertilization, Yongcun Qu, Qi Chen, Shanshan Guo, Chiyuan Ma, Yonggang Lu, Junchao Shi, Shichao Liu, Tong Zhou, Taichi Noda, Jingjing Qian, Liwen Zhang, Xili Zhu, Xiaohua Lei, Yujing Cao, Wei Li, Wei Li, Nicolas Plachta, Martin MMatzuk, Masahito Ikawa, Enkui Duan, Ying Zhang, Hongmei Wang, 2021 Origins and evolving functionalities of tRNA-derived small RNAs, Chen, Qi, Zhang, Xudong, Shi, Junchao, Yan, Menghong, Zhou, Tong, 2021 PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications, Shi, Junchao, Zhang, Yunfang, Tan, Dongmei, Zhang, Xudong, Yan, Menghong, Zhang, Ying, Franklin, Reuben, Shahbazi, Marta, Mackinlay, Kirsty, Liu, Shichao, Kuhle, Bernhard, James, Emma R, Zhang, Liwen, Qu, Yongcun, Zhai, Qiwei, Zhao, Wenxin, Zhao, Linlin, Zhou, Changcheng, Gu, Weifeng, Murn, Jernej, Guo, Jingtao, Carrell, Douglas T, Wang, Yinsheng, Chen, Xuemei, Cairns, Bradley R, Yang, Xianglei, Schimmel, Paul, ZernickaGoetz, Magdalena, Cheloufi, Sihem, Zhang, Ying, Zhou, Tong, Chen, Qi, 2021 Denoising Autoencoder, A Deep Learning Algorithm, Aids the Identification of A Novel Molecular Signature of Lung Adenocarcinoma, Wang, Jun, Xie, Xueying, Shi, Junchao, He, Wenjun, Chen, Qi, Chen, Liang, Gu, Wanjun, Zhou, Tong, 2020 Development of mouse preimplantation embryos in space, Lei, Xiaohua, Cao, Yujing, Ma, Baohua, Zhang, Yunfang, Ning, Lina, Qian, Jingjing, Zhang, Liwen, Qu, Yongcun, Zhang, Tao, Li, Dehong, Chen, Qi, Shi, Junchao, Zhang, Xudong, Ma, Chiyuan, Zhang, Ying, Duan, Enkui, 2020 Peripheral blood non-canonical small non-coding RNAs as novel biomarkers in lung cancer, Gu, Wanjun, Shi, Junchao, Liu, Hui, Zhang, Xudong, Zhou, Jin J, Li, Musheng, Zhou, Dandan, Li, Rui, Lv, Jingzhu, Wen, Guoxia, Zhu, Shanshan, Qi, Ting, Li, Wei, Wang, Xiaojing, Wang, Zhaohua, Zhu, Hua, Zhou, Changcheng, Knox, Kenneth S, Wang, Ting, Chen, Qi, Qian, Zhongqing, Zhou, Tong, 2020 Small RNA modifications in Alzheimer's disease, Zhang, Xudong, Trebak, Fatima, Souza, Lucas A C, Shi, Junchao, Zhou, Tong, Kehoe, Patrick G, Chen, Qi, Earley, Yumei Feng, 2020 tsRNAs: The Swiss Army Knife for Translational Regulation, Shi, Junchao, Zhang, Yunfang, Zhou, Tong, Chen, Qi, 2019 Sperm RNA code programmes the metabolic health of offspring, Zhang, Yunfang, Shi, Junchao, Rassoulzadegan, Minoo, Tuorto, Francesca, Chen, Qi, 2019 Asymmetric Expression of LincGET Biases Cell Fate in Two-Cell Mouse Embryos, Wang, Jiaqiang, Wang, Leyun, Feng, Guihai, Wang, Yukai, Li, Yufei, Li, Xin, Liu, Chao, Jiao, Guanyi, Huang, Cheng, Shi, Junchao, Zhou, Tong, Chen, Qi, Liu, Zhonghua, Li, Wei, Zhou, Qi, 2018 Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis, Qian, Zhongqing, Liu, Hui, Li, Musheng, Shi, Junchao, Li, Na, Zhang, Yao, Zhang, Xiaojie, Lv, Jingzhu, Xie, Xueying, Bai, Yunfei, Ge, Qinyu, Ko, EunA, Tang, Haiyang, Wang, Ting, Wang, Xiaojing, Wang, Zhaohua, Zhou, Tong, Gu, Wanjun, 2018 Rat BodyMap transcriptomes reveal unique circular RNA features across tissue types and developmental stages, Zhou, Tong, Xie, Xueying, Li, Musheng, Shi, Junchao, Zhou, Jin J, Knox, Kenneth S, Wang, Ting, Chen, Qi, Gu, Wanjun, 2018 Caffeine consumption during early pregnancy impairs oviductal embryo transport, embryonic development and uterine receptivity in mice, Qian, Jingjing, Zhang, Yunfang, Qu, Yongcun, Zhang, Liwen, Shi, Junchao, Zhang, Xudong, Liu, Shichao, Kim, Bo Hyun, Hwang, Sung Jin, Zhou, Tong, Chen, Qi, Ward, Sean M, Duan, Enkui, Zhang, Ying, 2018 SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs, Shi, Junchao, Ko, EunA, Sanders, Kenton M, Chen, Qi, Zhou, Tong, 2018 Epigenetic information in gametes: Gaming from before fertilization Comment on 'Epigenetic game theory: How to compute the epigenetic control of maternal-to-zygotic transition' by Qian Wang et al., Shi, Junchao, Zhang, Xudong, Liu, Ying, Chen, Qi, 2017 BCAS2 is involved in alternative mRNA splicing in spermatogonia and the transition to meiosis, Wenbo Liu, Fengchao Wang, Qianhua Xu, Junchao Shi, Xiaoxin Zhang, Xukun Lu, ZhenAo Zhao, Zheng Gao, Huaixiao Ma, Enkui Duan, Fei Gao, Shaorong Gao, Zhaohong Yi, Lei Li, 2017 tsRNAs: new players in mammalian retrotransposon control, Zhang, Yunfang, Zhang, Xudong, Shi, Junchao, Tuorto, Francesca, Li, Xin, Liu, Yusheng, Liebers, Reinhard, Zhang, Liwen, Qu, Yongcun, Qian, Jingjing, Pahima, Maya, Liu, Ying, Yan, Menghong, Cao, Zhonghong, Lei, Xiaohua, Cao, Yujing, Peng, Hongying, Liu, Shichao, Wang, Yue, Zheng, Huili, Woolsey, Rebekah, Quilici, David, Zhai, Qiwei, Li, Lei, Zhou, Tong, Yan, Wei, Lyko, Frank, Zhang, Ying, Zhou, Qi, Duan, Enkui, Chen, Qi, 2017 配子介导的哺乳动物获得性性状的跨代遗传, 陈琦, 侍骏超, 段恩奎, 2017 Dynamic transcriptional symmetry-breaking in pre-implantation mammalian embryo development revealed by single-cell RNA-seq, Shi Junchao, Chen Qi, Li Xin, Zheng Xiudeng, Zhang Ying, Qiao Jie, Tang Fuchou, Tao Yi, Zhou Qi, Duan Enkui, 2015 Senescence of human skin-derived precursors regulated by Akt-FOXO3-p27(KIP1)/p15(INK4b) signaling, Liu, Shuang, Wang, Xinyue, Zhao, Qian, Liu, Shu, Zhang, Huishan, Shi, Junchao, Li, Na, Lei, Xiaohua, Zhao, Huashan, Deng, Zhili, Cao, Yujing, Ning, Lina, Xia, Guoliang, Duan, Enkui, 2015 Uterine Rbpj is required for embryonic-uterine orientation and decidual remodeling via Notch pathway-independent and -dependent mechanisms, Zhang, Shuang, Kong, Shuangbo, Wang, Bingyan, Cheng, Xiaohong, Chen, Yongjie, Wu, Weiwei, Wang, Qiang, Shi, J

Areas of Focus

Non-coding RNA Genomics
Epigenetics
Early Embryonic Development

Publications

PANDORA-Seq unveils the hidden small noncoding RNA landscape in atherosclerosis of LDL receptor-deficient mice, Hernandez, Rebecca, Shi, Junchao, Liu, Jingwei, Li, Xiuchun, Wu, Jake, Zhao, Linlin, Zhou, Tong, Chen, Qi, Zhou, Changcheng, 2023
Paternal phthalate exposure-elicited offspring metabolic disorders are associated with altered sperm small RNAs in mice, Jingwei Liu, Junchao Shi, Rebecca Hernandez, Xiuchun Li, Pranav Konchadi, Yuma Miyake, Qi Chen, Tong Zhou, Changcheng Zhou, 2023
Exploring the expanding universe of small RNAs, Shi, Junchao, Zhou, Tong, Chen, Qi, 2022
Noncoding RNAs: biology and applications-a Keystone Symposia report, Cable, Jennifer, Heard, Edith, Hirose, Tetsuro, Prasanth, Kannanganattu, V, Chen, LingLing, Henninger, Jonathan E, Quinodoz, Sofia A, Spector, David L, Diermeier, Sarah D, Porman, Allison M, Kumar, Dhiraj, Feinberg, Mark W, Shen, Xiaohua, Unfried, Juan Pablo, Johnson, Rory, Chen, ChunKan, Wilusz, Jeremy E, Lempradl, Adelheid, McGeary, Sean E, Wahba, Lamia, Pyle, Anna Marie, Hargrove, Amanda E, Simon, Matthew D, Marcia, Marco, Przanowska, Roza K, Chang, Howard Y, Jaffrey, Samie R, Contreras, Lydia M, Chen, Qi, Shi, Junchao, Mendell, Joshua T, He, Lin, Song, Erwei, Rinn, John L, Lalwani, Mukesh Kumar, Kalem, Murat Can, Chuong, Edward B, Maquat, Lynne E, Liu, Xuhang, 2021
Cooperation-based sperm clusters mediate sperm oviduct entry and fertilization, Yongcun Qu, Qi Chen, Shanshan Guo, Chiyuan Ma, Yonggang Lu, Junchao Shi, Shichao Liu, Tong Zhou, Taichi Noda, Jingjing Qian, Liwen Zhang, Xili Zhu, Xiaohua Lei, Yujing Cao, Wei Li, Wei Li, Nicolas Plachta, Martin MMatzuk, Masahito Ikawa, Enkui Duan, Ying Zhang, Hongmei Wang, 2021
Origins and evolving functionalities of tRNA-derived small RNAs, Chen, Qi, Zhang, Xudong, Shi, Junchao, Yan, Menghong, Zhou, Tong, 2021
PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications, Shi, Junchao, Zhang, Yunfang, Tan, Dongmei, Zhang, Xudong, Yan, Menghong, Zhang, Ying, Franklin, Reuben, Shahbazi, Marta, Mackinlay, Kirsty, Liu, Shichao, Kuhle, Bernhard, James, Emma R, Zhang, Liwen, Qu, Yongcun, Zhai, Qiwei, Zhao, Wenxin, Zhao, Linlin, Zhou, Changcheng, Gu, Weifeng, Murn, Jernej, Guo, Jingtao, Carrell, Douglas T, Wang, Yinsheng, Chen, Xuemei, Cairns, Bradley R, Yang, Xianglei, Schimmel, Paul, ZernickaGoetz, Magdalena, Cheloufi, Sihem, Zhang, Ying, Zhou, Tong, Chen, Qi, 2021
Denoising Autoencoder, A Deep Learning Algorithm, Aids the Identification of A Novel Molecular Signature of Lung Adenocarcinoma, Wang, Jun, Xie, Xueying, Shi, Junchao, He, Wenjun, Chen, Qi, Chen, Liang, Gu, Wanjun, Zhou, Tong, 2020
Development of mouse preimplantation embryos in space, Lei, Xiaohua, Cao, Yujing, Ma, Baohua, Zhang, Yunfang, Ning, Lina, Qian, Jingjing, Zhang, Liwen, Qu, Yongcun, Zhang, Tao, Li, Dehong, Chen, Qi, Shi, Junchao, Zhang, Xudong, Ma, Chiyuan, Zhang, Ying, Duan, Enkui, 2020
Peripheral blood non-canonical small non-coding RNAs as novel biomarkers in lung cancer, Gu, Wanjun, Shi, Junchao, Liu, Hui, Zhang, Xudong, Zhou, Jin J, Li, Musheng, Zhou, Dandan, Li, Rui, Lv, Jingzhu, Wen, Guoxia, Zhu, Shanshan, Qi, Ting, Li, Wei, Wang, Xiaojing, Wang, Zhaohua, Zhu, Hua, Zhou, Changcheng, Knox, Kenneth S, Wang, Ting, Chen, Qi, Qian, Zhongqing, Zhou, Tong, 2020
Small RNA modifications in Alzheimer's disease, Zhang, Xudong, Trebak, Fatima, Souza, Lucas A C, Shi, Junchao, Zhou, Tong, Kehoe, Patrick G, Chen, Qi, Earley, Yumei Feng, 2020
tsRNAs: The Swiss Army Knife for Translational Regulation, Shi, Junchao, Zhang, Yunfang, Zhou, Tong, Chen, Qi, 2019
Sperm RNA code programmes the metabolic health of offspring, Zhang, Yunfang, Shi, Junchao, Rassoulzadegan, Minoo, Tuorto, Francesca, Chen, Qi, 2019
Asymmetric Expression of LincGET Biases Cell Fate in Two-Cell Mouse Embryos, Wang, Jiaqiang, Wang, Leyun, Feng, Guihai, Wang, Yukai, Li, Yufei, Li, Xin, Liu, Chao, Jiao, Guanyi, Huang, Cheng, Shi, Junchao, Zhou, Tong, Chen, Qi, Liu, Zhonghua, Li, Wei, Zhou, Qi, 2018
Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis, Qian, Zhongqing, Liu, Hui, Li, Musheng, Shi, Junchao, Li, Na, Zhang, Yao, Zhang, Xiaojie, Lv, Jingzhu, Xie, Xueying, Bai, Yunfei, Ge, Qinyu, Ko, EunA, Tang, Haiyang, Wang, Ting, Wang, Xiaojing, Wang, Zhaohua, Zhou, Tong, Gu, Wanjun, 2018
Rat BodyMap transcriptomes reveal unique circular RNA features across tissue types and developmental stages, Zhou, Tong, Xie, Xueying, Li, Musheng, Shi, Junchao, Zhou, Jin J, Knox, Kenneth S, Wang, Ting, Chen, Qi, Gu, Wanjun, 2018
Caffeine consumption during early pregnancy impairs oviductal embryo transport, embryonic development and uterine receptivity in mice, Qian, Jingjing, Zhang, Yunfang, Qu, Yongcun, Zhang, Liwen, Shi, Junchao, Zhang, Xudong, Liu, Shichao, Kim, Bo Hyun, Hwang, Sung Jin, Zhou, Tong, Chen, Qi, Ward, Sean M, Duan, Enkui, Zhang, Ying, 2018
SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs, Shi, Junchao, Ko, EunA, Sanders, Kenton M, Chen, Qi, Zhou, Tong, 2018
Epigenetic information in gametes: Gaming from before fertilization Comment on 'Epigenetic game theory: How to compute the epigenetic control of maternal-to-zygotic transition' by Qian Wang et al., Shi, Junchao, Zhang, Xudong, Liu, Ying, Chen, Qi, 2017
BCAS2 is involved in alternative mRNA splicing in spermatogonia and the transition to meiosis, Wenbo Liu, Fengchao Wang, Qianhua Xu, Junchao Shi, Xiaoxin Zhang, Xukun Lu, ZhenAo Zhao, Zheng Gao, Huaixiao Ma, Enkui Duan, Fei Gao, Shaorong Gao, Zhaohong Yi, Lei Li, 2017
tsRNAs: new players in mammalian retrotransposon control, Zhang, Yunfang, Zhang, Xudong, Shi, Junchao, Tuorto, Francesca, Li, Xin, Liu, Yusheng, Liebers, Reinhard, Zhang, Liwen, Qu, Yongcun, Qian, Jingjing, Pahima, Maya, Liu, Ying, Yan, Menghong, Cao, Zhonghong, Lei, Xiaohua, Cao, Yujing, Peng, Hongying, Liu, Shichao, Wang, Yue, Zheng, Huili, Woolsey, Rebekah, Quilici, David, Zhai, Qiwei, Li, Lei, Zhou, Tong, Yan, Wei, Lyko, Frank, Zhang, Ying, Zhou, Qi, Duan, Enkui, Chen, Qi, 2017
配子介导的哺乳动物获得性性状的跨代遗传, 陈琦, 侍骏超, 段恩奎, 2017
Dynamic transcriptional symmetry-breaking in pre-implantation mammalian embryo development revealed by single-cell RNA-seq, Shi Junchao, Chen Qi, Li Xin, Zheng Xiudeng, Zhang Ying, Qiao Jie, Tang Fuchou, Tao Yi, Zhou Qi, Duan Enkui, 2015
Senescence of human skin-derived precursors regulated by Akt-FOXO3-p27(KIP1)/p15(INK4b) signaling, Liu, Shuang, Wang, Xinyue, Zhao, Qian, Liu, Shu, Zhang, Huishan, Shi, Junchao, Li, Na, Lei, Xiaohua, Zhao, Huashan, Deng, Zhili, Cao, Yujing, Ning, Lina, Xia, Guoliang, Duan, Enkui, 2015
Uterine Rbpj is required for embryonic-uterine orientation and decidual remodeling via Notch pathway-independent and -dependent mechanisms, Zhang, Shuang, Kong, Shuangbo, Wang, Bingyan, Cheng, Xiaohong, Chen, Yongjie, Wu, Weiwei, Wang, Qiang, Shi, J

Non-Coding Rna Genomics Epigenetics Embryonic Development Rna Sequencing Gene Expression Bioinformatics Genetic Regulation Rna Modifications Small Rnas

Qi Liu - Tongji University

Lu Dongdong - Tongji University

Chenfei Wang - Tongji University

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