2007-09--2012-06 PhD: Wuhan Botanical Garden, Chinese Academy of Sciences
Research
Polyploidy and Gene Duplication Methylation and Gene Regulation Genome Chromosome Evolution Aquatic Flowering Plants
Expression inheritance and constraints on cis- and trans-regulatory mutations underlying lotus color variation, Gao, Zhiyan, Yang, Xingyu, Chen, Jinming, Rausher, Mark D, Shi, Tao, 2023
Genome-wide association study of traits in sacred lotus uncovers MITE-associated variants underlying stamen petaloid and petal number variations, Gao, Zhiyan, Liang, Yuting, Wang, Yuhan, Xiao, Yingjie, Chen, Jinming, Yang, Xingyu, Shi, Tao, 2022
Evolution of isoform-level gene expression patterns across tissues during lotus species divergence, Zhang, Yue, Yang, Xingyu, Van de Peer, Yves, Chen, Jinming, Marchal, Kathleen, Shi, Tao, 2022
Biased allelic expression in tissues of F1 hybrids between tropical and temperate lotus (Nelumbo nuicfera), Gao, Zhiyan, Li, Hui, Yang, Xingyu, Yang, Pingfang, Chen, Jinming, Shi, Tao, 2021
Distinct methylome patterns contribute to ecotypic differentiation in the growth of the storage organ of a flowering plant (sacred lotus), Li, Hui, Yang, Xingyu, Wang, Qingfeng, Chen, Jinming, Shi, Tao, 2021
Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera, Hui Li, Xingyu Yang, Yue Zhang, Zhiyan Gao, Yuting Liang, Jinming Chen, Tao Shi, 2021
Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes, Seyed Rahmani, Razgar, Shi, Tao, Zhang, Dongzhi, Gou, Xiaoping, Yi, Jing, Miclotte, Giles, Marchal, Kathleen, Li, Jia, 2021
A reappraisal of the phylogenetic placement of the Aquilegia whole-genome duplication, Shi, Tao, Chen, Jinming, 2020
Resequencing 93 accessions of coffee unveils independent and parallel selection during Coffea species divergence, Huang, Lifang, Wang, Xiaoyang, Dong, Yunping, Long, Yuzhou, Hao, Chaoyun, Yan, Lin, Shi, Tao, 2020
Distinct Expression and Methylation Patterns for Genes with Different Fates following a Single Whole-Genome Duplication in Flowering Plants, Shi, Tao, Rahmani, Razgar Seyed, Gugger, Paul F, Wang, Muhua, Li, Hui, Zhang, Yue, Li, Zhizhong, Wang, Qingfeng, Van de Peer, Yves, Marchal, Kathleen, Chen, Jinming, 2020
The level of genetic diversity and differentiation of tropical lotus, Nelumbo nucifera Gaertn. (Nelumbonaceae) from Australia, India, and Thailand, Mekbib, Yeshitila, Huang, ShiXu, Ngarega, Boniface K, Li, ZhiZhong, Shi, Tao, Ou, KeFang, Liang, YuTing, Chen, JinMing, Yang, XingYu, 2020
Integrative expression network analysis of microRNA and gene isoforms in sacred lotus, Zhang, Yue, Rahmani, Razgar Seyed, Yang, Xingyu, Chen, Jinming, Shi, Tao, 2020
Gene expression and evolution of Family-1 UDP-glycosyltransferases-insights from an aquatic flowering plant (sacred lotus), Li, Hui, Yang, Xingyu, Lu, Mengxue, Chen, Jinming, Shi, Tao, 2020
Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes, Razgar Seyed Rahmani, Giles Miclotte, Kathleen Marchal, Tao Shi, Jia Li, Dongzhi Zhang, Xiaoping Gou, Jing Yi, 2020
The complexity of alternative splicing and landscape of tissue-specific expression in lotus (Nelumbo nucifera) unveiled by Illumina- and single-molecule real-time-based RNA-sequencing, Zhang, Yue, NyongA, Tonny Maraga, Shi, Tao, Yang, Pingfang, 2019
Transcriptomic analysis identifies the key genes involved in stamen petaloid in lotus (Nelumbo nucifera), Lin, Zhongyuan, Damaris, Rebecca Njeri, Shi, Tao, Li, Juanjuan, Yang, Pingfang, 2018
Low genetic diversity and functional constraint of miRNA genes participating pollen-pistil interaction in rice, Wang, Kun, Wang, Xin, Li, Ming, Shi, Tao, Yang, Pingfang, 2017
The evolution of plant microRNAs: insights from a basal eudicot sacred lotus, Shi, Tao, Wang, Kun, Yang, Pingfang, 2017
Ancient microRNA families that regulate transcription factors are preferentially preserved during plant radiation, Shi, Tao, Wang, Kun, Yang, Pingfang, 2016
Impact of gene family evolutionary histories on phylogenetic species tree inference by gene tree parsimony, Shi, Tao, 2016
Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales, Shi, Tao, Huang, Hongwen, Barker, Michael S, 2010
