Professor | Dingfeng Wu | Asia Growth Partners

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Name	Dingfeng Wu
Contact Information	dfw_bioinfo@126.com
Language ability	Chinese, English
Province	Zhejiang

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Name

Dingfeng Wu

Contact Information

dfw_bioinfo@126.com

Language ability

Chinese, English

Province

Zhejiang

University/Lab Affiliation and Title	Zhejiang University
Faculty	Medical
Academic Background & Achievements	2013.9-2018.6: PhD in Biology, Tongji University, School of Life Sciences and Technology. Supervisor: Professor Hongbing Wang 2009.9-2013.6: Bachelor's degree in Bioinformatics, Tongji University, School of Life Sciences and Technology
Work Experience	2021.9-present: Distinguished Researcher, Zhejiang University School of Medicine, Children's Hospital 2018.9-2021.9: Postdoctoral Researcher, Department of Bioinformatics, Tongji University. Supervisor: Professor Ruixin Zhu
Awards	Outstanding Academic Exchange Award, Chinese Society for Microbiology Annual Meeting, 2020

University/Lab Affiliation and Title

Zhejiang University

Faculty

Medical

Academic Background & Achievements

2013.9-2018.6: PhD in Biology, Tongji University, School of Life Sciences and Technology. Supervisor: Professor Hongbing Wang
2009.9-2013.6: Bachelor's degree in Bioinformatics, Tongji University, School of Life Sciences and Technology

Work Experience

2021.9-present: Distinguished Researcher, Zhejiang University School of Medicine, Children's Hospital
2018.9-2021.9: Postdoctoral Researcher, Department of Bioinformatics, Tongji University. Supervisor: Professor Ruixin Zhu

Awards

Outstanding Academic Exchange Award, Chinese Society for Microbiology Annual Meeting, 2020

Areas of Focus	Disease and Microbiome Machine Learning and Artificial Intelligence Computer-Aided Drug Design
Publications	Phylogenetic analyses with systematic taxon sampling show that mitochondria branch within Alphaproteobacteria, Fan L, Wu D, Goremykin V, Xiao J, Xu Y, Garg S, Zhang C, Martin WF, Zhu R, 2020 Risk factors for the critical illness in SARS-CoV-2 infection: a multicenter retrospective cohort study, Cheng S, Wu D, Li J, Zou Y, Wan Y, Shen L, Zhu L, Shi M, Hou L, Xu T, Jiao N, Li Y, Huang Y, Tang Z, Xu M, Jiang S, Li M, Yan G, Lan P, Zhu R, 2020 Dr AFC: drug repositioning through anti-fibrosis characteristic, Wu D, Gao W, Li X, Tian C, Jiao N, Fang S, Xiao J, Xu Z, Zhu L, Zhang G, Zhu R, 2020 Exploring the mechanism of flavonoids through systematic bioinformatics analysis, Qiu T, Wu D, Yang L, Ye H, Wang Q, Cao Z, Tang K, 2018 Finding the molecular scaffold of nuclear receptor inhibitors through high-throughput screening based on proteochemometric modelling, Qiu T, Wu D, Qiu J, Cao Z, 2018 Systematic toxicity mechanism analysis of proton pump inhibitors: an in silico study, Wu D, Qiu T, Zhang Q, Kang H, Yuan S, Zhu L, Zhu R, 2015 Screening of selective histone deacetylase inhibitors by proteochemometric modeling, Wu D, Huang Q, Zhang Y, Zhang Q, Liu Q, Gao J, Cao Z, Zhu R, 2012 Enteric involvement in hospitalised patients with COVID-19 outside Wuhan, Wan Y, Li J, Shen L, Zou Y, Hou L, Zhu L, Faden HS, Tang Z, Shi M, Jiao N, Li Y, Cheng S, Huang Y, Wu D, Xu Z, Pan L, Zhu J, Yan G, Zhu R, Lan P, 2020 The roles of Qishen granules recipes, Qingre Jiedu, Wenyang Yiqi and Huo Xue, in the treatment of heart failure, Gao S, Zhang Q, Tian C, Li C, Lin Y, Gao W, Wu D, Jiao N, Zhu L, Li W, Zhu R, Wang W, Wang Y, 2020 Archaea, the tree of life, and cellular evolution in eukaryotes, Xiao J, Fan L, Wu D, Xu Y, Lai D, Martin WF, Zhu R, Zhang C, 2019 Comparative network pharmacology analysis of classical TCM prescriptions for chronic liver disease, Chen Z, Wang X, Li Y, Wang Y, Tang K, Wu D, Zhao W, Ma Y, Liu P, Cao Z, 2019 CE-BLAST makes it possible to compute antigenic similarity for newly emerging pathogens, Qiu T, Qiu J, Feng J, Wu D, Yang Y, Tang K, Cao Z, Zhu R, 2018 The recent progress in proteochemometric modelling: focusing on target descriptors, cross-term descriptors and application scope, Qiu T, Qiu J, Feng J, Wu D, Yang Y, Tang K, Cao Z, Zhu R, 2017 Systematic transcriptome analysis reveals elevated expression of alcohol‐metabolizing genes in NAFLD livers, Zhu R, Baker SS, Moylan CA, Abdelmalek MF, Guy CD, Zamboni F, Wu D, Lin W, Liu W, Baker RD, Govindarajan S, Cao Z, Farci P, Diehl AM, Zhu L, 2016 Incorporating structure context of HA protein to improve antigenicity calculation for influenza virus A/H3N2, Qiu J, Qiu T, Yang Y, Wu D, Cao Z, 2016 Connection map for compounds (CMC): a server for combinatorial drug toxicity and efficacy analysis, Liu L, Tsompana M, Wang Y, Wu D, Zhu L, Zhu R, 2016 bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming, Gao J, Zhang Q, Liu M, Zhu L, Wu D, Cao Z, Zhu R, 2016 Combining genomic and network characteristics for extended capability in predicting synergistic drugs for cancer, Sun Y, Sheng Z, Ma C, Tang K, Zhu R, Wu Z, Shen R, Feng J, Wu D, Huang D, Fei J, Liu Q, Cao Z, 2015 Proteochemometric modeling of the antigen-antibody interaction: new fingerprints for antigen, antibody and epitope-paratope interaction, Qi T, Qiu T, Zhang Q, Tang K, Fan Y, Qiu J, Wu D, Zhang W, Chen Y, Gao J, Zhu R, Cao Z, 2015 SEPPA 2.0—more refined server to predict spatial epitope considering species of immune host and subcellular localization of protein antigen, Qi T, Qiu T, Zhang Q, Tang K, Fan Y, Qiu J, Wu D, Zhang W, Chen Y, Gao J, Zhu R, Cao Z, 2014 Study on human GPCR–inhibitor interactions by proteochemometric modeling, Gao J, Huang Q, Wu D, Zhang Q, Zhang Y, Chen T, Liu Q, Zhu R, Cao Z, He Y, 2013

Areas of Focus

Disease and Microbiome
Machine Learning and Artificial Intelligence
Computer-Aided Drug Design

Publications

Phylogenetic analyses with systematic taxon sampling show that mitochondria branch within Alphaproteobacteria, Fan L, Wu D, Goremykin V, Xiao J, Xu Y, Garg S, Zhang C, Martin WF, Zhu R, 2020
Risk factors for the critical illness in SARS-CoV-2 infection: a multicenter retrospective cohort study, Cheng S, Wu D, Li J, Zou Y, Wan Y, Shen L, Zhu L, Shi M, Hou L, Xu T, Jiao N, Li Y, Huang Y, Tang Z, Xu M, Jiang S, Li M, Yan G, Lan P, Zhu R, 2020
Dr AFC: drug repositioning through anti-fibrosis characteristic, Wu D, Gao W, Li X, Tian C, Jiao N, Fang S, Xiao J, Xu Z, Zhu L, Zhang G, Zhu R, 2020
Exploring the mechanism of flavonoids through systematic bioinformatics analysis, Qiu T, Wu D, Yang L, Ye H, Wang Q, Cao Z, Tang K, 2018
Finding the molecular scaffold of nuclear receptor inhibitors through high-throughput screening based on proteochemometric modelling, Qiu T, Wu D, Qiu J, Cao Z, 2018
Systematic toxicity mechanism analysis of proton pump inhibitors: an in silico study, Wu D, Qiu T, Zhang Q, Kang H, Yuan S, Zhu L, Zhu R, 2015
Screening of selective histone deacetylase inhibitors by proteochemometric modeling, Wu D, Huang Q, Zhang Y, Zhang Q, Liu Q, Gao J, Cao Z, Zhu R, 2012
Enteric involvement in hospitalised patients with COVID-19 outside Wuhan, Wan Y, Li J, Shen L, Zou Y, Hou L, Zhu L, Faden HS, Tang Z, Shi M, Jiao N, Li Y, Cheng S, Huang Y, Wu D, Xu Z, Pan L, Zhu J, Yan G, Zhu R, Lan P, 2020
The roles of Qishen granules recipes, Qingre Jiedu, Wenyang Yiqi and Huo Xue, in the treatment of heart failure, Gao S, Zhang Q, Tian C, Li C, Lin Y, Gao W, Wu D, Jiao N, Zhu L, Li W, Zhu R, Wang W, Wang Y, 2020
Archaea, the tree of life, and cellular evolution in eukaryotes, Xiao J, Fan L, Wu D, Xu Y, Lai D, Martin WF, Zhu R, Zhang C, 2019
Comparative network pharmacology analysis of classical TCM prescriptions for chronic liver disease, Chen Z, Wang X, Li Y, Wang Y, Tang K, Wu D, Zhao W, Ma Y, Liu P, Cao Z, 2019
CE-BLAST makes it possible to compute antigenic similarity for newly emerging pathogens, Qiu T, Qiu J, Feng J, Wu D, Yang Y, Tang K, Cao Z, Zhu R, 2018
The recent progress in proteochemometric modelling: focusing on target descriptors, cross-term descriptors and application scope, Qiu T, Qiu J, Feng J, Wu D, Yang Y, Tang K, Cao Z, Zhu R, 2017
Systematic transcriptome analysis reveals elevated expression of alcohol‐metabolizing genes in NAFLD livers, Zhu R, Baker SS, Moylan CA, Abdelmalek MF, Guy CD, Zamboni F, Wu D, Lin W, Liu W, Baker RD, Govindarajan S, Cao Z, Farci P, Diehl AM, Zhu L, 2016
Incorporating structure context of HA protein to improve antigenicity calculation for influenza virus A/H3N2, Qiu J, Qiu T, Yang Y, Wu D, Cao Z, 2016
Connection map for compounds (CMC): a server for combinatorial drug toxicity and efficacy analysis, Liu L, Tsompana M, Wang Y, Wu D, Zhu L, Zhu R, 2016
bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming, Gao J, Zhang Q, Liu M, Zhu L, Wu D, Cao Z, Zhu R, 2016
Combining genomic and network characteristics for extended capability in predicting synergistic drugs for cancer, Sun Y, Sheng Z, Ma C, Tang K, Zhu R, Wu Z, Shen R, Feng J, Wu D, Huang D, Fei J, Liu Q, Cao Z, 2015
Proteochemometric modeling of the antigen-antibody interaction: new fingerprints for antigen, antibody and epitope-paratope interaction, Qi T, Qiu T, Zhang Q, Tang K, Fan Y, Qiu J, Wu D, Zhang W, Chen Y, Gao J, Zhu R, Cao Z, 2015
SEPPA 2.0—more refined server to predict spatial epitope considering species of immune host and subcellular localization of protein antigen, Qi T, Qiu T, Zhang Q, Tang K, Fan Y, Qiu J, Wu D, Zhang W, Chen Y, Gao J, Zhu R, Cao Z, 2014
Study on human GPCR–inhibitor interactions by proteochemometric modeling, Gao J, Huang Q, Wu D, Zhang Q, Zhang Y, Chen T, Liu Q, Zhu R, Cao Z, He Y, 2013

Disease Microbiome Machine Learning Artificial Intelligence Drug Design Bioinformatics Metagenomics Causal Inference Dynamic Intervention Nafld

Jian Wu - Zhejiang University

Guo Guoji - Zhejiang University

Yu Qi - Zhejiang University

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