Five Continents Women's Science and Technology Award
ESI Highly Cited Scholar (2020, 2021)
Research
Bioinformatics of Complex Diseases Cancer Multi-Omics Big Data Analysis
LncACTdb 3.0: an updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine., Wang, P., Q. Guo, Y. Qi, Y. Hao, Y. Gao, H. Zhi, Y. Zhang, Y. Sun, Y. Zhang, M. Xin, Y. Zhang, S. Ning, and X. Li, 2021
TransLnc: a comprehensive resource for translatable lncRNAs extends immunopeptidome., Lv, D., Z. Chang, Y. Cai, J. Li, L. Wang, Q. Jiang, K. Xu, N. Ding, X. Li, J. Xu, and Y. Li, 2021
ImmReg: the regulon atlas of immune-related pathways across cancer types., Jiang, T., W. Zhou, Z. Chang, H. Zou, J. Bai, Q. Sun, T. Pan, J. Xu, Y. Li, and X. Li, 2021
Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer., Li, X., X. Pan, H. Zhou, P. Wang, Y. Gao, S. Shang, S. Guo, J. Sun, Z. Xiong, S. Ning, H. Zhi, and X. Li, 2021
Gain-of-Function Mutations: An Emerging Advantage for Cancer Biology., Li, Y., Y. Zhang, X. Li, S. Yi, and J. Xu, 2019
MERIT: Systematic Analysis and Characterization of Mutational Effect on RNA Interactome Topology., Li, Y., D.J. McGrail, J. Xu, J. Li, N.N. Liu, M. Sun, R. Lin, R. Pancsa, J. Zhang, J.S. Lee, H. Wang, G.B. Mills, X. Li, S. Yi, and N. Sahni, 2019
LnCeCell: a comprehensive database of predicted lncRNA-associated ceRNA networks at single-cell resolution., Wang, P., Q. Guo, Y. Hao, Q. Liu, Y. Gao, H. Zhi, X. Li, S. Shang, S. Guo, Y. Zhang, S. Ning, and X. Li, 2021
Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data., Gao, Y., S. Shang, S. Guo, X. Li, H. Zhou, H. Liu, Y. Sun, J. Wang, P. Wang, H. Zhi, X. Li, S. Ning, and Y. Zhang, 2021
LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements., Gao, Y., X. Li, S. Shang, S. Guo, P. Wang, D. Sun, J. Gan, J. Sun, Y. Zhang, J. Wang, X. Wang, X. Li, Y. Zhang, and S. Ning, 2021
Pan-cancer characterization of immune-related lncRNAs identifies potential oncogenic biomarkers., Li, Y., T. Jiang, W. Zhou, J. Li, X. Li, Q. Wang, X. Jin, J. Yin, L. Chen, Y. Zhang, J. Xu, and X. Li, 2020
LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation., Wang, P., X. Li, Y. Gao, Q. Guo, S. Ning, Y. Zhang, S. Shang, J. Wang, Y. Wang, H. Zhi, Y. Fang, W. Shen, G. Zhang, S.X. Chen, and X. Li, 2020
LncTarD: a manually-curated database of experimentally-supported functional lncRNA-target regulations in human diseases., Zhao, H., J. Shi, Y. Zhang, A. Xie, L. Yu, C. Zhang, J. Lei, H. Xu, Z. Leng, T. Li, W. Huang, S. Lin, L. Wang, Y. Xiao, and X. Li, 2020
Complex impact of DNA methylation on transcriptional dysregulation across 22 human cancer types., Wang, Z., J. Yin, W. Zhou, J. Bai, Y. Xie, K. Xu, X. Zheng, J. Xiao, L. Zhou, X. Qi, Y. Li, X. Li, and J. Xu, 2020
Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers., Gao, Y., P. Wang, Y. Wang, X. Ma, H. Zhi, D. Zhou, X. Li, Y. Fang, W. Shen, Y. Xu, S. Shang, L. Wang, L. Wang, S. Ning, and X. Li, 2019
LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low- and high-throughput experiments., Wang, P., X. Li, Y. Gao, Q. Guo, Y. Wang, Y. Fang, X. Ma, H. Zhi, D. Zhou, W. Shen, W. Liu, L. Wang, Y. Zhang, S. Ning, and X. Li, 2019
CancerSEA: a cancer single-cell state atlas., Yuan, H., M. Yan, G. Zhang, W. Liu, C. Deng, G. Liao, L. Xu, T. Luo, H. Yan, Z. Long, A. Shi, T. Zhao, Y. Xiao, and X. Li, 2019
CellMarker: a manually curated resource of cell markers in human and mouse., Zhang, X., Y. Lan, J. Xu, F. Quan, E. Zhao, C. Deng, T. Luo, L. Xu, G. Liao, M. Yan, Y. Ping, F. Li, A. Shi, J. Bai, T. Zhao, X. Li, and Y. Xiao, 2019
LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations., Li, Y., L. Li, Z. Wang, T. Pan, N. Sahni, X. Jin, G. Wang, J. Li, X. Zheng, Y. Zhang, J. Xu, S. Yi, and X. Li, 2018
FACER: comprehensive molecular and functional characterization of epigenetic chromatin regulators., Lu, J., J. Xu, J. Li, T. Pan, J. Bai, L. Wang, X. Jin, X. Lin, Y. Zhang, Y. Li, N. Sahni, and X. Li, 2018
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease., Zhi, H., X. Li, P. Wang, Y. Gao, B. Gao, D. Zhou, Y. Zhang, M. Guo, M. Yue, W. Shen, S. Ning, L. Jin, and X. Li, 2018
SEECancer: a resource for somatic events in evolution of cancer genome., Zhang, H., S. Luo, X. Zhang, J. Liao, F. Quan, E. Zhao, C. Zhou, F. Yu, W. Yin, Y. Zhang, Y. Xiao, and X. Li, 2018
DiseaseEnhancer: a resource of human disease-associated enhancer catalog., Zhang, G., J. Shi, S. Zhu, Y. Lan, L. Xu, H. Yuan, G. Liao, X. Liu, Y. Zhang, Y. Xiao, and X. Li, 2018
MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases., Yue, M., D. Zhou, H. Zhi, P. Wang, Y. Zhang, Y. Gao, M. Guo, X. Li, Y. Wang, Y. Zhang, S. Ning, and X. Li, 2018
Cooperative genomic alteration network reveals molecular classification across 12 major cancer types., Zhang, H., Y. Deng, Y. Zhang, Y. Ping, H. Zhao, L. Pang, X. Zhang, L. Wang, C. Xu, Y. Xiao, and X. Li, 2017
LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs., Ning, S., M. Yue, P. Wang, Y. Liu, H. Zhi, Y. Zhang, J. Zhang, Y. Gao, M. Guo, D. Zhou, X. Li, and X. Li, 2017
Extensive ceRNA–ceRNA interaction networks mediated by miRNAs regulate development in multiple rhesus tissues., Xu, J., Feng, L., Han, Z., Li, Y., Wu, A., Shao, T., Ding, N., Li, L., Deng, W., Di, X., Wang, J., Zhang, L., Xia, L., Zhang, K., and Cheng, Sh., 2016
Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers., Ning, S., J. Zhang, P. Wang, H. Zhi, J. Wang, Y. Liu, Y. Gao, M. Guo, M. Yue, L. Wang, and X. Li, 2016
Molecular characterization and clinical relevance of m(6)A regulators across 33 cancer types., Li, Y., J. Xiao, J. Bai, Y. Tian, Y. Qu, X. Chen, Q. Wang, X. Li, Y. Zhang, and J. Xu, 2019
Sex difference of mutation clonality in diffuse glioma evolution., Zhang, H., J. Liao, X. Zhang, E. Zhao, X. Liang, S. Luo, J. Shi, F. Yu, J. Xu, W. Shen, Y. Li, Y. Xiao, and X. Li, 2019
