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Jinyuan Xu
Bioinformatics Science and Technology
Harbin Medical University
Heilongjiang
Language: Chinese, English
Biomedical Data
Big Data
Integration
Deep Learning
Single-Cell
Tumor Evolution
Cell States
Clonal Structure
Molecular Mechanisms
Data Analysis
Areas of Focus
- Biomedical Big Data Integration Analysis
- Deep Learning and Single-Cell Data Analysis in Tumor Evolution
Work Experience
- 2021.08-present - Harbin Medical University, School of Biomedical Informatics and Technology - Associate Professor
- 2018.07-2021.07 - Harbin Medical University, School of Biomedical Informatics and Technology - Lecturer
- 2018.07-2020.07 - Harbin Medical University Second Affiliated Hospital, Neurology - Postdoctoral Researcher
Academic Background & Achievements
- 2015.09–2018.06 PhD in Biomedical Engineering: Harbin Medical University
- 2013.09–2015.06 Master's in Biomedical Engineering: Harbin Medical University
- 2008.09–2013.06 Bachelor's in Biotechnology: Harbin Medical University
- Hosted or participated in 5 research projects in the last five years
Publications
- Identifying the personalized driver gene sets maximally contributing to abnormality of transcriptome phenotype in glioblastoma multiforme individuals, Jinyuan Xu, 2023
- The Heterogeneous Cellular States of Glioblastoma Stem Cells Revealed by Single Cell Analysis, Jinyuan Xu, 2023
- Systematic investigation of the prognostic impact of clonal status of somatic mutations across multiple cancer types, Jinyuan Xu, 2022
- Capturing functional long non-coding RNAs through integrating large-scale causal relations from gene perturbation experiments, Jinyuan Xu, 2018
- CellMarker: a manually curated resource of cell markers in human and mouse, Jinyuan Xu, 2019
- Breast cancer prognosis signature: linking risk stratification to disease subtypes, Jinyuan Xu, 2019
- A comprehensive overview of lncRNA annotation resources, Jinyuan Xu, 2017
- Integrated analysis of ferroptosis-related gene signature for overall survival prediction in Asian patients with hepatocellular carcinoma, Jinyuan Xu, 2023
- Identification of Dysregulated Competitive Endogenous RNA Networks Driven by Copy Number Variations in Malignant Gliomas, Jinyuan Xu, 2019
- Identification of a Six-lncRNA Signature With Prognostic Value for Breast Cancer Patients, Jinyuan Xu, 2020
- Genome-wide DNA methylome reveals the dysfunction of intronic microRNAs in major psychosis, Jinyuan Xu, 2020
- Transcriptome analysis reveals a reprogramming energy metabolism-related signature to improve prognosis in colon cancer, Jinyuan Xu, 2020
Awards
- 2019: National Second Prize in the National College Student Mathematical Modeling Competition
- 2022: M Award (First Prize) in the American College Student Mathematical Modeling Competition
- 2023: First Prize in the Northeast Three Provinces Mathematical Modeling League
- 2023: First Prize in the Heilongjiang Division of the National College Student Mathematical Modeling Competition
