Professor | Yan Jun | Asia Growth Partners

Name	Yan Jun
Contact Information	yanjun_AT_cau.edu.cn
Language ability	Chinese, English
Province	Beijing

Name

Yan Jun

Contact Information

yanjun_AT_cau.edu.cn

Language ability

Chinese, English

Province

Beijing

University/Lab Affiliation and Title	China Agricultural University
Faculty	Agriculture
Academic Background & Achievements	2016.09.01-2020.06.15 PhD in Crop Genetics and Breeding, China Agricultural University 2008.09.01-2011.06.22 Master of Science in Marine Biology, Tsinghua University 2004.09.01-2008.07.01 Bachelor of Science in Biological Sciences, China Agricultural University

University/Lab Affiliation and Title

China Agricultural University

Faculty

Agriculture

Academic Background & Achievements

2016.09.01-2020.06.15 PhD in Crop Genetics and Breeding, China Agricultural University
2008.09.01-2011.06.22 Master of Science in Marine Biology, Tsinghua University
2004.09.01-2008.07.01 Bachelor of Science in Biological Sciences, China Agricultural University

Areas of Focus	Plant genomics and bioinformatics Machine learning and AI in genomics
Publications	iFLAS: positive-unlabeled learning facilitates full-length transcriptome-based identification and functional exploration of alternatively spliced isoforms in maize, Xu F, Liu S, Zhao A, Shang M, Wang Q, Jiang S, Cheng Q, Chen X, Zhai X, Zhang J, Wang X, Yan J, 2024 G2P Provides an Integrative Environment for Multi-model genomic selection analysis to improve genotype-to-phenotype prediction, Wang Q, Jiang S, Li T, Qiu Z, Yan J, Fu R, Ma C, Wang X, Jiang S, Cheng Q, 2023 Machine learning bridges omics sciences and plant breeding, Yan J, Wang X, 2023 Unsupervised and semi-supervised learning: the next frontier in machine learning for plant systems biology, Yan J, Wang X, 2022 MODAS: exploring maize germplasm with multi-omics data association studies, Liu S, Xu F, Xu Y, Wang Q, Yan J, Wang J, Wang X, Wang X, 2022 Resequencing 250 soybean accessions: new insights into genes associated with agronomic traits and genetic networks, Yang C, Yan J, Jiang S, Li X, Min H, Wang X, Hao D, 2022 LightGBM: Accelerated genomically designed crop breeding through ensemble learning, Yan J, Xu Y, Cheng Q, Jiang S, Xiao Y, Ma C, Yan J B, Wang X, 2021 The genetic mechanism of heterosis utilization in maize improvement, Xiao Y, Jiang S, Cheng Q, Wang X, Yan J, Zhang R, Qiao F, Ma C, Luo J, Li W, Liu H, Yang W, Song W, Meng Y, Warburton M L, Zhao J, Wang X, Yan J B, 2021 obaDIA: one-step biological analysis pipeline for data-independent acquisition and other quantitative proteomics data, Yan J, Zhai H, Zhu L, Sa S, Ding X, 2021 SR4R: An integrative SNP resource for genomic breeding and population research in rice, Yan J, Zou D, Li C, Zhang Z, Song S, Wang X, 2020 Genome optimization for improvement of maize breeding, Jiang S, Cheng Q, Yan J, Fu R, Wang X, 2020 Powdery mildews are characterized by contracted carbohydrate metabolism and diverse effectors to adapt to obligate biotrophic lifestyle, Liang P, Liu S, Xu F, Jiang S, Yan J, He Q, Liu W, Lin C, Zheng F, Wang X, Miao W, 2018 Hybrid sequencing of full-length cDNA transcripts of stems and leaves in Dendrobium officinale, He L, Fu S, Xu Z, Yan J, Xu J, Zhou H, Zhou J, Chen X, Li Y, Au K F, Yao H, 2017 mRNA and small RNA transcriptomes reveal insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid wheat, Li A, Liu D, Wu J, Zhao X, Hao M, Geng S, Yan J, Jiang X, Zhang L, Wu J, Yin L, Zhang R, Wu L, Zheng Y, Mao L, 2014 Molecular evolution and functional divergence of the cytochrome P450 3(CYP3) family in Actinopterygii (ray-finned fish), Yan J, Cai Z, 2010

Areas of Focus

Plant genomics and bioinformatics
Machine learning and AI in genomics

Publications

iFLAS: positive-unlabeled learning facilitates full-length transcriptome-based identification and functional exploration of alternatively spliced isoforms in maize, Xu F, Liu S, Zhao A, Shang M, Wang Q, Jiang S, Cheng Q, Chen X, Zhai X, Zhang J, Wang X, Yan J, 2024
G2P Provides an Integrative Environment for Multi-model genomic selection analysis to improve genotype-to-phenotype prediction, Wang Q, Jiang S, Li T, Qiu Z, Yan J, Fu R, Ma C, Wang X, Jiang S, Cheng Q, 2023
Machine learning bridges omics sciences and plant breeding, Yan J, Wang X, 2023
Unsupervised and semi-supervised learning: the next frontier in machine learning for plant systems biology, Yan J, Wang X, 2022
MODAS: exploring maize germplasm with multi-omics data association studies, Liu S, Xu F, Xu Y, Wang Q, Yan J, Wang J, Wang X, Wang X, 2022
Resequencing 250 soybean accessions: new insights into genes associated with agronomic traits and genetic networks, Yang C, Yan J, Jiang S, Li X, Min H, Wang X, Hao D, 2022
LightGBM: Accelerated genomically designed crop breeding through ensemble learning, Yan J, Xu Y, Cheng Q, Jiang S, Xiao Y, Ma C, Yan J B, Wang X, 2021
The genetic mechanism of heterosis utilization in maize improvement, Xiao Y, Jiang S, Cheng Q, Wang X, Yan J, Zhang R, Qiao F, Ma C, Luo J, Li W, Liu H, Yang W, Song W, Meng Y, Warburton M L, Zhao J, Wang X, Yan J B, 2021
obaDIA: one-step biological analysis pipeline for data-independent acquisition and other quantitative proteomics data, Yan J, Zhai H, Zhu L, Sa S, Ding X, 2021
SR4R: An integrative SNP resource for genomic breeding and population research in rice, Yan J, Zou D, Li C, Zhang Z, Song S, Wang X, 2020
Genome optimization for improvement of maize breeding, Jiang S, Cheng Q, Yan J, Fu R, Wang X, 2020
Powdery mildews are characterized by contracted carbohydrate metabolism and diverse effectors to adapt to obligate biotrophic lifestyle, Liang P, Liu S, Xu F, Jiang S, Yan J, He Q, Liu W, Lin C, Zheng F, Wang X, Miao W, 2018
Hybrid sequencing of full-length cDNA transcripts of stems and leaves in Dendrobium officinale, He L, Fu S, Xu Z, Yan J, Xu J, Zhou H, Zhou J, Chen X, Li Y, Au K F, Yao H, 2017
mRNA and small RNA transcriptomes reveal insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid wheat, Li A, Liu D, Wu J, Zhao X, Hao M, Geng S, Yan J, Jiang X, Zhang L, Wu J, Yin L, Zhang R, Wu L, Zheng Y, Mao L, 2014
Molecular evolution and functional divergence of the cytochrome P450 3(CYP3) family in Actinopterygii (ray-finned fish), Yan J, Cai Z, 2010

Genomics Bioinformatics Machine Learning Artificial Intelligence Crop Breeding Genetic Resources Transcriptomics Phenotyping Data Mining Molecular Networks

Hainan Zhao - China Agricultural University

Xiangfeng Wang - China Agricultural University

Xin Beibei - China Agricultural University

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