Professor | Qiangfeng Cliff Zhang | Asia Growth Partners

Name	Qiangfeng Cliff Zhang
Contact Information	qczhang@tsinghua.edu.cn
Language ability	English, Chinese
Province	Beijing

Name

Qiangfeng Cliff Zhang

Contact Information

qczhang@tsinghua.edu.cn

Language ability

English, Chinese

Province

Beijing

University/Lab Affiliation and Title	Tsinghua University
Faculty	Life Sciences
Academic Background & Achievements	1996-2000 Bachelor: University of Science and Technology of China 2000-2006 PhD in Computer Science: University of Science and Technology of China 2006-2011 PhD in Biochemistry and Molecular Biophysics: Columbia University
Work Experience	2011-2012 Postdoctoral Researcher at Center for Computational Biology and Bioinformatics, Columbia University 2012-2015 Postdoctoral Researcher at Stanford University School of Medicine 2015-2018 Assistant Professor at Tsinghua University School of Life Sciences 2018-Present Associate Professor at Tsinghua University School of Life Sciences

University/Lab Affiliation and Title

Tsinghua University

Faculty

Life Sciences

Academic Background & Achievements

1996-2000 Bachelor: University of Science and Technology of China
2000-2006 PhD in Computer Science: University of Science and Technology of China
2006-2011 PhD in Biochemistry and Molecular Biophysics: Columbia University

Work Experience

2011-2012 Postdoctoral Researcher at Center for Computational Biology and Bioinformatics, Columbia University
2012-2015 Postdoctoral Researcher at Stanford University School of Medicine
2015-2018 Assistant Professor at Tsinghua University School of Life Sciences
2018-Present Associate Professor at Tsinghua University School of Life Sciences

Areas of Focus	Artificial Intelligence in Life Sciences Structural Biology Genomics RNA Biology Single-cell Genomics Cryo-EM based Protein Structure Modeling AI Algorithm Development
Publications	Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human, Qiangfeng Cliff Zhang et al., 2024 Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space, Qiangfeng Cliff Zhang et al., 2022 Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2, Qiangfeng Cliff Zhang et al., 2021 A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments, Qiangfeng Cliff Zhang et al., 2021 RNA structure probing reveals the structural basis of Dicer binding and cleavage, Qiangfeng Cliff Zhang et al., 2021 In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs, Qiangfeng Cliff Zhang et al., 2021 Predicting dynamic cellular protein-RNA interactions by deep learning using in vivo RNA structures, Qiangfeng Cliff Zhang et al., 2021 Keth-seq for transcriptome-wide RNA structure mapping, Qiangfeng Cliff Zhang et al., 2020 SCALE method for single-cell ATAC-seq analysis via latent feature extraction, Qiangfeng Cliff Zhang et al., 2019 RNA structure maps across mammalian cellular compartments, Qiangfeng Cliff Zhang et al., 2019 A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes, Qiangfeng Cliff Zhang et al., 2019 Integrative Analysis of Zika Virus Genome RNA Structure Reveals Critical Determinants of Viral Infectivity, Qiangfeng Cliff Zhang et al., 2018

Areas of Focus

Artificial Intelligence in Life Sciences
Structural Biology
Genomics
RNA Biology
Single-cell Genomics
Cryo-EM based Protein Structure Modeling
AI Algorithm Development

Publications

Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human, Qiangfeng Cliff Zhang et al., 2024
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space, Qiangfeng Cliff Zhang et al., 2022
Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2, Qiangfeng Cliff Zhang et al., 2021
A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments, Qiangfeng Cliff Zhang et al., 2021
RNA structure probing reveals the structural basis of Dicer binding and cleavage, Qiangfeng Cliff Zhang et al., 2021
In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs, Qiangfeng Cliff Zhang et al., 2021
Predicting dynamic cellular protein-RNA interactions by deep learning using in vivo RNA structures, Qiangfeng Cliff Zhang et al., 2021
Keth-seq for transcriptome-wide RNA structure mapping, Qiangfeng Cliff Zhang et al., 2020
SCALE method for single-cell ATAC-seq analysis via latent feature extraction, Qiangfeng Cliff Zhang et al., 2019
RNA structure maps across mammalian cellular compartments, Qiangfeng Cliff Zhang et al., 2019
A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes, Qiangfeng Cliff Zhang et al., 2019
Integrative Analysis of Zika Virus Genome RNA Structure Reveals Critical Determinants of Viral Infectivity, Qiangfeng Cliff Zhang et al., 2018

Ai Life Sciences Structural Biology Genomics Rna Single-Cell Cryo-Em Protein Modeling Algorithm Development Biomedical Data

Qi Liu - Tongji University

Xiao-Lei Wang - Shanghai Jiao Tong University

Zhi John Lu - Tsinghua University

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