Professor | Jingfa Xiao | Asia Growth Partners

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Name	Jingfa Xiao
Contact Information	xiaojingfa@big.ac.cn
Language ability	Chinese, English
Province	Beijing

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Name

Jingfa Xiao

Contact Information

xiaojingfa@big.ac.cn

Language ability

Chinese, English

Province

Beijing

University/Lab Affiliation and Title	University of Chinese Academy of Sciences
Faculty	Life Sciences
Academic Background & Achievements	1998-09--2003-07 PhD: Jilin University 1991-09--1995-07 Bachelor's Degree: Sichuan University, Department of Biology
Work Experience	2019-11~Present - Beijing Institute of Genomics, Chinese Academy of Sciences (National Center for Bioinformation) - Researcher 2012-05~Present - Beijing Institute of Genomics, Chinese Academy of Sciences - Researcher 2007-02~2012-05 - Beijing Institute of Genomics, Chinese Academy of Sciences - Associate Researcher 2005-11~2007-02 - University of Utah, USA - Postdoctoral Researcher 2003-07~2005-08 - Institute of Materia Medica, Peking Union Medical College - Postdoctoral Researcher 1995-07~1998-08 - Shenyang First Pharmaceutical Factory - Assistant Engineer

University/Lab Affiliation and Title

University of Chinese Academy of Sciences

Faculty

Life Sciences

Academic Background & Achievements

1998-09--2003-07 PhD: Jilin University
1991-09--1995-07 Bachelor's Degree: Sichuan University, Department of Biology

Work Experience

2019-11~Present - Beijing Institute of Genomics, Chinese Academy of Sciences (National Center for Bioinformation) - Researcher
2012-05~Present - Beijing Institute of Genomics, Chinese Academy of Sciences - Researcher
2007-02~2012-05 - Beijing Institute of Genomics, Chinese Academy of Sciences - Associate Researcher
2005-11~2007-02 - University of Utah, USA - Postdoctoral Researcher
2003-07~2005-08 - Institute of Materia Medica, Peking Union Medical College - Postdoctoral Researcher
1995-07~1998-08 - Shenyang First Pharmaceutical Factory - Assistant Engineer

Areas of Focus	Genomics Bioinformatics
Publications	Transcriptome-wide association studies: recent advances in methods, applications and available databases, Jialin Mai, Mingming Lu, Qianwen Gao, Jingyao Zeng, Jingfa Xiao, 2023 T2T-YAO, T2T-SHUN, and more, Jingfa Xiao, Jun Yu, 2023 HervD Atlas: A Curated Knowledgebase of Associations Between Human Endogenous Retroviruses and Diseases, Cuidan Li, Qiheng Qian, Chenghao Yan, Mingming Lu, Lin Li, Pan Li, Zhuojing Fan, Wenyan Lei, Kang Shang, Peihan Wang, Jie Wang, Tianyi Lu, Yuting Huang, Hongwei Yang, Haobin Wei, Jingwan Han, Jingfa Xiao, Fei Chen, 2023 ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics, Yadong Zhang, Hao Zhang, Zaichao Zhang, Qiheng Qian, Zhewen Zhang, Jingfa Xiao, 2023 Cell Taxonomy: a curated repository of cell types with multifaceted characterization, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Yunfei Shang, Tong Jin, Yuansheng Zhang, Ming Chen, Zishan Wu, Yuan Chu, Rongqin Zhang, Sicheng Luo, Wei Jing, Dong Zou, Yiming Bao, Jingfa Xiao, Zhang Zhang, 2023 CCLHunter: An efficient toolkit for cancer cell line authentication, Congfan Bu, Xinchang Zheng, Jialin Mai, Zhi Nie, Jingyao Zeng, Qiheng Qian, Tianyi Xu, Yanling Sun, Yiming Bao, Jingfa Xiao, 2023 m6A epitranscriptomic regulation of tissue homeostasis during primate aging, Zeming Wu, Mingming Lu, Di Liu, Yue Shi, Jie Ren, Si Wang, Ying Jing, Sheng Zhang, Qian Zhao, Hongyu Li, Zhihui Yu, Zunpeng Liu, Shijia Bi, Tuo Wei, YunGui Yang, Jingfa Xiao, Juan Carlos Izpisua Belmonte, Jing Qu, Weiqi Zhang, Weimin Ci, GuangHui Liu, 2023 TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies, Mingming Lu, Yadong Zhang, Fengchun Yang, Jialin Mai, Qianwen Gao, Xiaowei Xu, Hongyu Kang, Li Hou, Yunfei Shang, Qiheng Qian, Jie Liu, Meiye Jiang, Hao Zhang, Congfan Bu, Jingyue Wang, Zaichao Zhang, Jingyao Zeng, Jiao Li, Jingfa Xiao, 2023 The C-Terminal Repeat Units of SpaA Mediate Adhesion of Erysipelothrix rhusiopathiae to Host Cells and Regulate Its Virulence, Chao Wu, Zhewen Zhang, Chao Kang, Qiang Zhang, Weifeng Zhu, Yadong Zhang, Hao Zhang, Jingfa Xiao, Meilin Jin, 2022 Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022, Xue, Yongbiao, Bao, Yiming, Zhang Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Guoping, Zhao, Chen, Runsheng, Zeng, Jingyao, Zhang, Yadong, Shang, Yunfei, Mai, Jialin, Shi, Shuo, Lu, Mingming, Bu, Congfan, Zhang, Zhewen, Du, Zhenglin, Wang, Yinying, Kang, Hongen, Xu, Tianyi, Hao, Lili, Jia, Peilin, Jiang, Shuai, Qian, Qiheng, Zhu, Tongtong, Shang, Yunfei, Zong, Wenting, Jin, Tong, Zhang, Yuansheng, Zou, Dong, Zhang, Zhang, Du, Qiang, Feng, Changrui, Ma, Lina, Zhang, Sisi, Wang, Anke, Dong, Lili, Wang, Yanqing, Liu, Wan, Yan, Xing, Ling, Yunchao, Zhao, Guoping, Zhou, Zhihua, Kang, Wang, Zhang, Tao, Ma, Shuai, Yan, Haoteng, Liu, Zunpeng, Ji, Zejun, Cai, Yusheng, Wang, Si, Song, Moshi, Ren, Jie, Zhou, Qi, Qu, Jing, Zhang, Weiqi, Liu, Guanghui, Chen, Xu, Chen, Tingting, Sisi, Zhang, Sun, Yanling, Yu, Caixia, Tang, Bixia, Zhu, Junwei, Zhai, Shuang, Sun, Yubin, Chen, Qiancheng, Yang, Xiaoyu, Zhang, Xin, Sang, Zhengqi, Wang, Yonggang, Zhao, Yilin, Chen, Huanxin,, 2022 TSomVar: a tumor-only somatic and germline variant identification method with random forest, Shuo Shi, Qi Wang, Yunfei Shang, Congfan Bu, Mingming Lu, Meiye Jiang, Hao Zhang, Shuhuan Yu, Jingyao Zeng, Zaichao Zhang, Zhenglin Du, Jingfa Xiao, 2022 CCAS: One-stop and comprehensive annotation system for individual cancer genome at multi-omics level, Xinchang Zheng, Wenting Zong, Zhaohua Li, Yingke Ma, Yanling Sun, Zhuang Xiong, Song Wu, Fei Yang, Wei Zhao, Congfan Bu, Zhenglin Du, Jingfa Xiao, Yiming Bao, 2022 RefRGim: an intelligent reference panel reconstruction method for genotype imputation with convolutional neural networks, Shuo Shi, Qiheng Qian, Shuhuan Yu, Qi Wang, Jinyue Wang, Jingyao Zeng, Zhenglin Du, Jingfa Xiao, 2021 Applications and challenges of high performance computing in genomics, Jiang, Meiye, Bu, Congfan, Zeng, Jingyao, Du, Zhenglin, Xiao, Jingfa, 2021 Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels, Zhang, Yuansheng, Zou, Dong, Zhu, Tongtong, Xu, Tianyi, Chen, Ming, Niu, Guangyi, Zong, Wenting, Pan, Rong, Jing, Wei, Sang, Jian, Liu, Chang, Xiong, Yujia, Sun, Yubin, Zhai, Shuang, Chen, Huanxin, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Hao, Lili, Zhang, Zhang, 2021 CancerSCEM: a database of single-cell expression map across various human cancers, Zeng, Jingyao, Zhang, Yadong, Shang, Yunfei, Mai, Jialin, Shi, Shuo, Lu, Mingming, Bu, Congfan, Zhang, Zhewen, Zhang, Zaichao, Li, Yang, Du, Zhenglin, Xiao, Jingfa, 2021 Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021, Xue, Yongbiao, Bao, Yiming, Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Gong, Zheng, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chu

Areas of Focus

Genomics
Bioinformatics

Publications

Transcriptome-wide association studies: recent advances in methods, applications and available databases, Jialin Mai, Mingming Lu, Qianwen Gao, Jingyao Zeng, Jingfa Xiao, 2023
T2T-YAO, T2T-SHUN, and more, Jingfa Xiao, Jun Yu, 2023
HervD Atlas: A Curated Knowledgebase of Associations Between Human Endogenous Retroviruses and Diseases, Cuidan Li, Qiheng Qian, Chenghao Yan, Mingming Lu, Lin Li, Pan Li, Zhuojing Fan, Wenyan Lei, Kang Shang, Peihan Wang, Jie Wang, Tianyi Lu, Yuting Huang, Hongwei Yang, Haobin Wei, Jingwan Han, Jingfa Xiao, Fei Chen, 2023
ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics, Yadong Zhang, Hao Zhang, Zaichao Zhang, Qiheng Qian, Zhewen Zhang, Jingfa Xiao, 2023
Cell Taxonomy: a curated repository of cell types with multifaceted characterization, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Yunfei Shang, Tong Jin, Yuansheng Zhang, Ming Chen, Zishan Wu, Yuan Chu, Rongqin Zhang, Sicheng Luo, Wei Jing, Dong Zou, Yiming Bao, Jingfa Xiao, Zhang Zhang, 2023
CCLHunter: An efficient toolkit for cancer cell line authentication, Congfan Bu, Xinchang Zheng, Jialin Mai, Zhi Nie, Jingyao Zeng, Qiheng Qian, Tianyi Xu, Yanling Sun, Yiming Bao, Jingfa Xiao, 2023
m6A epitranscriptomic regulation of tissue homeostasis during primate aging, Zeming Wu, Mingming Lu, Di Liu, Yue Shi, Jie Ren, Si Wang, Ying Jing, Sheng Zhang, Qian Zhao, Hongyu Li, Zhihui Yu, Zunpeng Liu, Shijia Bi, Tuo Wei, YunGui Yang, Jingfa Xiao, Juan Carlos Izpisua Belmonte, Jing Qu, Weiqi Zhang, Weimin Ci, GuangHui Liu, 2023
TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies, Mingming Lu, Yadong Zhang, Fengchun Yang, Jialin Mai, Qianwen Gao, Xiaowei Xu, Hongyu Kang, Li Hou, Yunfei Shang, Qiheng Qian, Jie Liu, Meiye Jiang, Hao Zhang, Congfan Bu, Jingyue Wang, Zaichao Zhang, Jingyao Zeng, Jiao Li, Jingfa Xiao, 2023
The C-Terminal Repeat Units of SpaA Mediate Adhesion of Erysipelothrix rhusiopathiae to Host Cells and Regulate Its Virulence, Chao Wu, Zhewen Zhang, Chao Kang, Qiang Zhang, Weifeng Zhu, Yadong Zhang, Hao Zhang, Jingfa Xiao, Meilin Jin, 2022
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022, Xue, Yongbiao, Bao, Yiming, Zhang Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Guoping, Zhao, Chen, Runsheng, Zeng, Jingyao, Zhang, Yadong, Shang, Yunfei, Mai, Jialin, Shi, Shuo, Lu, Mingming, Bu, Congfan, Zhang, Zhewen, Du, Zhenglin, Wang, Yinying, Kang, Hongen, Xu, Tianyi, Hao, Lili, Jia, Peilin, Jiang, Shuai, Qian, Qiheng, Zhu, Tongtong, Shang, Yunfei, Zong, Wenting, Jin, Tong, Zhang, Yuansheng, Zou, Dong, Zhang, Zhang, Du, Qiang, Feng, Changrui, Ma, Lina, Zhang, Sisi, Wang, Anke, Dong, Lili, Wang, Yanqing, Liu, Wan, Yan, Xing, Ling, Yunchao, Zhao, Guoping, Zhou, Zhihua, Kang, Wang, Zhang, Tao, Ma, Shuai, Yan, Haoteng, Liu, Zunpeng, Ji, Zejun, Cai, Yusheng, Wang, Si, Song, Moshi, Ren, Jie, Zhou, Qi, Qu, Jing, Zhang, Weiqi, Liu, Guanghui, Chen, Xu, Chen, Tingting, Sisi, Zhang, Sun, Yanling, Yu, Caixia, Tang, Bixia, Zhu, Junwei, Zhai, Shuang, Sun, Yubin, Chen, Qiancheng, Yang, Xiaoyu, Zhang, Xin, Sang, Zhengqi, Wang, Yonggang, Zhao, Yilin, Chen, Huanxin,, 2022
TSomVar: a tumor-only somatic and germline variant identification method with random forest, Shuo Shi, Qi Wang, Yunfei Shang, Congfan Bu, Mingming Lu, Meiye Jiang, Hao Zhang, Shuhuan Yu, Jingyao Zeng, Zaichao Zhang, Zhenglin Du, Jingfa Xiao, 2022
CCAS: One-stop and comprehensive annotation system for individual cancer genome at multi-omics level, Xinchang Zheng, Wenting Zong, Zhaohua Li, Yingke Ma, Yanling Sun, Zhuang Xiong, Song Wu, Fei Yang, Wei Zhao, Congfan Bu, Zhenglin Du, Jingfa Xiao, Yiming Bao, 2022
RefRGim: an intelligent reference panel reconstruction method for genotype imputation with convolutional neural networks, Shuo Shi, Qiheng Qian, Shuhuan Yu, Qi Wang, Jinyue Wang, Jingyao Zeng, Zhenglin Du, Jingfa Xiao, 2021
Applications and challenges of high performance computing in genomics, Jiang, Meiye, Bu, Congfan, Zeng, Jingyao, Du, Zhenglin, Xiao, Jingfa, 2021
Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels, Zhang, Yuansheng, Zou, Dong, Zhu, Tongtong, Xu, Tianyi, Chen, Ming, Niu, Guangyi, Zong, Wenting, Pan, Rong, Jing, Wei, Sang, Jian, Liu, Chang, Xiong, Yujia, Sun, Yubin, Zhai, Shuang, Chen, Huanxin, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Hao, Lili, Zhang, Zhang, 2021
CancerSCEM: a database of single-cell expression map across various human cancers, Zeng, Jingyao, Zhang, Yadong, Shang, Yunfei, Mai, Jialin, Shi, Shuo, Lu, Mingming, Bu, Congfan, Zhang, Zhewen, Zhang, Zaichao, Li, Yang, Du, Zhenglin, Xiao, Jingfa, 2021
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021, Xue, Yongbiao, Bao, Yiming, Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Gong, Zheng, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chu

Genomics Bioinformatics Big Data Rna-Seq Genome Analysis Transcriptomics Data Integration Computational Biology Genetic Variation Precision Medicine

Xiao-Lei Wang - Shanghai Jiao Tong University

Chao Chen - Central South University

Dehua Hu - Central South University

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