Areas of Focus
- Epigenetics
- DNA Methylation
- Cancer Diagnosis
- Single-cell Transcriptome Data Mining
Work Experience
- 2020-01~Present - Chinese Academy of Sciences, Center for Excellence in Molecular Cell Science - Researcher
- 2014-08~2019-07 - Dana-Farber Cancer Institute - Research Associate
- 2012-06~2014-08 - Harvard T.H. Chan School of Public Health - Research Fellow
- 2010-06~2012-05 - Illumina (Shanghai) - Bioinformatics Support Scientist
Academic Background & Achievements
- 2003-09--2010-06 PhD: Shanghai Institute of Life Sciences, Chinese Academy of Sciences
- 1999-09--2003-06 Bachelor's: Huazhong University of Science and Technology
Publications
- mHapTk: a comprehensive toolkit for the analysis of DNA methylation haplotypes, Ding, Yi, Cai, Kangwen, Liu, Leiqin, Zhang, Zhiqiang, Zheng, Xiaoqi, Shi, Jiantao, 2022
- Identification of Master Regulators Driving Disease Progression, Relapse, and Drug Resistance in Lung Adenocarcinoma, Qiong Xu, Qiongfang Cha, Hui Qin, Bin Liu, Xueling Wu, Jiantao Shi, 2022
- The DNA methylation haplotype (mHap) format and mHapTools, Zhang, Zhiqiang, Dan, Yuhao, Xu, Yaochen, Zhang, Jiarui, Zheng, Xiaoqi, Shi, Jiantao, 2021
- Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer, Smith, Zachary D, Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacchiarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander, 2017
- The Mutational Landscape of Circulating Tumor Cells in Multiple Myeloma, Mishima, Yuji, Paiva, Bruno, Shi, Jiantao, Park, Jihye, Manier, Salomon, Takagi, Satoshi, Massoud, Mira, PerillaGlen, Adriana, Aljawai, Yosra, Huynh, Daisy, Roccaro, Aldo M, Sacco, Antonio, Capelletti, Marzia, Detappe, Alexandre, Alignani, Diego, Anderson, Kenneth C, Munshi, Nikhil C, Prosper, Felipe, Lohr, Jens G, Ha, Gavin, Freeman, Samuel S, Van Allen, Eliezer M, Adalsteinsson, Viktor A, Michor, Franziska, San Miguel, Jesus F, Ghobrial, Irene M, 2017
- Exome sequencing reveals recurrent germline variants in patients with familial Waldenstrom's macroglobulinemia, Shi Jiantao, 2016
- AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses, Shi, Jiantao, Yang, Wentao, Chen, Mingjie, Du, Yanzhi, Zhang, Ji, Wang, Kankan, 2011
- PML/RAR alpha Targets Promoter Regions Containing PU.1 Consensus and RARE Half Sites in Acute Promyelocytic Leukemia, Wang, Kankan, Wang, Ping, Shi, Jiantao, Zhu, Xuehua, He, Miaomiao, Jia, Xiaohong, Yang, Xianwen, Qiu, Fei, Jin, Wen, Qian, Maoxiang, Fang, Hai, Mi, Jianqing, Yang, Xuzhi, Xiao, Huasheng, Minden, Mark, Du, Yanzhi, Chen, Zhu, Zhang, Ji, 2010
Awards
- Best Paper of the Year (2010): Ruijin Hospital, First Prize
