Professor | 石建涛 | 数字化转型顾问

Name	石建涛
Contact Information	jtshi@sibcb.ac.cn
Language ability	中文, 英语
Province	上海

Name

石建涛

Contact Information

jtshi@sibcb.ac.cn

Language ability

中文, 英语

Province

上海

University/Lab Affiliation and Title	中国科学院大学
Faculty	Medical School
Academic Background & Achievements	2003-09--2010-06 博士: 中国科学院上海生命科学研究院 1999-09--2003-06 学士: 华中科技大学
Work Experience	2020-01~现在 - 中国科学院分子细胞科学卓越创新中心 - 研究员 2014-08~2019-07 - Dana-Farber癌症研究所 - 研究助理 2012-06~2014-08 - 哈佛大学T.H. Chan公共卫生学院 - 研究员 2010-06~2012-05 - Illumina (上海) - 生物信息学支持科学家
Awards	年度最佳论文 (2010): 瑞金医院, 一等奖

University/Lab Affiliation and Title

中国科学院大学

Faculty

Medical School

Academic Background & Achievements

2003-09--2010-06 博士: 中国科学院上海生命科学研究院
1999-09--2003-06 学士: 华中科技大学

Work Experience

2020-01~现在 - 中国科学院分子细胞科学卓越创新中心 - 研究员
2014-08~2019-07 - Dana-Farber癌症研究所 - 研究助理
2012-06~2014-08 - 哈佛大学T.H. Chan公共卫生学院 - 研究员
2010-06~2012-05 - Illumina (上海) - 生物信息学支持科学家

Awards

年度最佳论文 (2010): 瑞金医院, 一等奖

Areas of Focus	表观遗传学 DNA甲基化肿瘤诊断单细胞转录组数据挖掘
Publications	mHapTk: a comprehensive toolkit for the analysis of DNA methylation haplotypes, Ding, Yi, Cai, Kangwen, Liu, Leiqin, Zhang, Zhiqiang, Zheng, Xiaoqi, Shi, Jiantao, 2022 Identification of Master Regulators Driving Disease Progression, Relapse, and Drug Resistance in Lung Adenocarcinoma, Qiong Xu, Qiongfang Cha, Hui Qin, Bin Liu, Xueling Wu, Jiantao Shi, 2022 The DNA methylation haplotype (mHap) format and mHapTools, Zhang, Zhiqiang, Dan, Yuhao, Xu, Yaochen, Zhang, Jiarui, Zheng, Xiaoqi, Shi, Jiantao, 2021 Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer, Smith, Zachary D, Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacchiarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander, 2017 The Mutational Landscape of Circulating Tumor Cells in Multiple Myeloma, Mishima, Yuji, Paiva, Bruno, Shi, Jiantao, Park, Jihye, Manier, Salomon, Takagi, Satoshi, Massoud, Mira, PerillaGlen, Adriana, Aljawai, Yosra, Huynh, Daisy, Roccaro, Aldo M, Sacco, Antonio, Capelletti, Marzia, Detappe, Alexandre, Alignani, Diego, Anderson, Kenneth C, Munshi, Nikhil C, Prosper, Felipe, Lohr, Jens G, Ha, Gavin, Freeman, Samuel S, Van Allen, Eliezer M, Adalsteinsson, Viktor A, Michor, Franziska, San Miguel, Jesus F, Ghobrial, Irene M, 2017 Exome sequencing reveals recurrent germline variants in patients with familial Waldenstrom's macroglobulinemia, Shi Jiantao, 2016 AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses, Shi, Jiantao, Yang, Wentao, Chen, Mingjie, Du, Yanzhi, Zhang, Ji, Wang, Kankan, 2011 PML/RAR alpha Targets Promoter Regions Containing PU.1 Consensus and RARE Half Sites in Acute Promyelocytic Leukemia, Wang, Kankan, Wang, Ping, Shi, Jiantao, Zhu, Xuehua, He, Miaomiao, Jia, Xiaohong, Yang, Xianwen, Qiu, Fei, Jin, Wen, Qian, Maoxiang, Fang, Hai, Mi, Jianqing, Yang, Xuzhi, Xiao, Huasheng, Minden, Mark, Du, Yanzhi, Chen, Zhu, Zhang, Ji, 2010

Areas of Focus

表观遗传学
DNA甲基化
肿瘤诊断
单细胞转录组数据挖掘

Publications

mHapTk: a comprehensive toolkit for the analysis of DNA methylation haplotypes, Ding, Yi, Cai, Kangwen, Liu, Leiqin, Zhang, Zhiqiang, Zheng, Xiaoqi, Shi, Jiantao, 2022
Identification of Master Regulators Driving Disease Progression, Relapse, and Drug Resistance in Lung Adenocarcinoma, Qiong Xu, Qiongfang Cha, Hui Qin, Bin Liu, Xueling Wu, Jiantao Shi, 2022
The DNA methylation haplotype (mHap) format and mHapTools, Zhang, Zhiqiang, Dan, Yuhao, Xu, Yaochen, Zhang, Jiarui, Zheng, Xiaoqi, Shi, Jiantao, 2021
Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer, Smith, Zachary D, Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacchiarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander, 2017
The Mutational Landscape of Circulating Tumor Cells in Multiple Myeloma, Mishima, Yuji, Paiva, Bruno, Shi, Jiantao, Park, Jihye, Manier, Salomon, Takagi, Satoshi, Massoud, Mira, PerillaGlen, Adriana, Aljawai, Yosra, Huynh, Daisy, Roccaro, Aldo M, Sacco, Antonio, Capelletti, Marzia, Detappe, Alexandre, Alignani, Diego, Anderson, Kenneth C, Munshi, Nikhil C, Prosper, Felipe, Lohr, Jens G, Ha, Gavin, Freeman, Samuel S, Van Allen, Eliezer M, Adalsteinsson, Viktor A, Michor, Franziska, San Miguel, Jesus F, Ghobrial, Irene M, 2017
Exome sequencing reveals recurrent germline variants in patients with familial Waldenstrom's macroglobulinemia, Shi Jiantao, 2016
AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses, Shi, Jiantao, Yang, Wentao, Chen, Mingjie, Du, Yanzhi, Zhang, Ji, Wang, Kankan, 2011
PML/RAR alpha Targets Promoter Regions Containing PU.1 Consensus and RARE Half Sites in Acute Promyelocytic Leukemia, Wang, Kankan, Wang, Ping, Shi, Jiantao, Zhu, Xuehua, He, Miaomiao, Jia, Xiaohong, Yang, Xianwen, Qiu, Fei, Jin, Wen, Qian, Maoxiang, Fang, Hai, Mi, Jianqing, Yang, Xuzhi, Xiao, Huasheng, Minden, Mark, Du, Yanzhi, Chen, Zhu, Zhang, Ji, 2010

表观遗传学 Dna甲基化癌症诊断单细胞转录组数据挖掘基因组学生物信息学分子生物学

袁必锋 - 武汉大学

Alexander Strunnikov - 中国科学院大学

黄河 - 中国科学院大学

Area of Focus
化学生物学: 化学 | 生物学 | 合成 | 药物发现 | 分子 | 互动 | 生物有机 | 医药 | 生物化学 | 药理学 | 蛋白质组学: 蛋白质 | 质谱 | 鉴定 | 定量 | 生物标志物 | 翻译后修饰 | 细胞过程 | 生物信息学 | 系统生物学 | 功能分析 | 表观遗传学: 基因表达 | Dna甲基化 | 组蛋白修饰 | 染色质 | 非编码Rna | 遗传 | 细胞记忆 | 发育 | 疾病 | 调控

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