Professor | Jinfeng Chen | Asia Growth Partners

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Name	Jinfeng Chen
Contact Information	chenjinfeng@ioz.ac.cn
Language ability	Chinese, English
Province	Beijing

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Name

Jinfeng Chen

Contact Information

chenjinfeng@ioz.ac.cn

Language ability

Chinese, English

Province

Beijing

University/Lab Affiliation and Title	Chinese Academy of Sciences
Faculty	Institute of Zoology
Academic Background & Achievements	2004 - Bachelor's Degree: Northwest A&F University 2006 - Master's Degree in Biochemistry and Molecular Biology: Northwest A&F University 2012 - PhD in Genetics: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Work Experience	2013-2019 - University of California, Riverside - Postdoctoral Research 2017-2019 - University of California, Riverside - Assistant Project Scientist 2019-2020 - City of Hope National Medical Center - Staff Scientist 2020-Present - Chinese Academy of Sciences, Institute of Zoology - Research Group Leader

University/Lab Affiliation and Title

Chinese Academy of Sciences

Faculty

Institute of Zoology

Academic Background & Achievements

2004 - Bachelor's Degree: Northwest A&F University
2006 - Master's Degree in Biochemistry and Molecular Biology: Northwest A&F University
2012 - PhD in Genetics: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Work Experience

2013-2019 - University of California, Riverside - Postdoctoral Research
2017-2019 - University of California, Riverside - Assistant Project Scientist
2019-2020 - City of Hope National Medical Center - Staff Scientist
2020-Present - Chinese Academy of Sciences, Institute of Zoology - Research Group Leader

Areas of Focus	Genomics of pest-host interactions Genome structure and evolution Sustainable pest control methods
Publications	Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet., Chen J, Liu Y, Liu M, Guo W, Wang Y, He Q, Chen W, Liao Y, Zhang W, Gao Y, Dong K, Ren R, Yang T, Zhang L, Qi M, Li Z, Zhao M, Wang H, Wang J, Qiao Z, Li H, Jiang Y, Liu G, Song X, Deng Y, Li H, Yan F, Dong Y, Li Q, Li T, Yang W, Cui J, Wang H, Zhou Y, Zhang X, Jia G, Lu P, Zhi H, Tang S, Diao X., 2023 A graph-based genome and pangenome variation of the model plant Setaria., He Q, Tang S, Zhi H, Chen J, Zhang J, Liang H, Alam O, Li H, Zhang H, Xing L, Li X, Zhang W, Wang H, Shi J, Du H, Wu H, Wang L, Yang P, Xing L, Yan H, Song Z, Liu J, Wang H, Tian X, Qiao Z, Feng G, Guo R, Zhu W, Ren Y, Hao H, Li M, Zhang A, Guo E, Yan F, Li Q, Liu Y, Tian B, Zhao X, Jia R, Feng B, Zhang J, Wei J, Lai J, Jia G, Purugganan M, Diao X., 2023 Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome., Sun Y, Liu Y, Shi J, Wang L, Liang C, Yang J, Chen J, Chen M., 2023 A lncRNA fine-tunes salicylic acid biosynthesis to balance plant immunity and growth., Liu N, Xu Z, Li Q, Cao Y, Yang D, Liu S, Wang X, Mi Y, Liu Y, Ding C, Liu Y, Li Y, Yuan Y, Gao G, Chen J, Qian W, Zhang X., 2022 SARS-CoV-2 RNAs are processed into 22-nt vsRNAs in Vero cells., Liu Y, Rao J, Mi Y, Chen L, Feng L, Li Q, Geng J, Yang X, Zhan X, Ren L, Chen J, Zhang X., 2022 Serial single-cell genomics reveals convergent subclonal evolution of resistance as patients with early-stage breast cancer progress on endocrine plus CDK4/6 therapy., Griffiths, J.I., Chen, J., Cosgrove, P.A., O’Dea, A., Sharma, P., Ma, C., Trivedi, M., Kalinsky, K., Wisinski, K.B., O’Regan, R., Makhoul, I., Spring, L.M., Bardia, A., Adler, F.R., Cohen, A.L., Chang, J.T., Khan, Q.J. & Bild, A.H., 2021 Genomic diversity generated by a transposable element burst in a rice recombinant inbred population., Chen J, Lu L, Robb SMC, Collin M, Okumoto Y, Stajich JE, Wessler SR., 2020 Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice., Chen J, Lu L, Benjamin J, Diaz S, Hancock CN, Stajich JE, et al., 2019 Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions., Liao Y, Zhang X, Li B, Liu T, Chen J, Bai Z, Wang M, Shi J, Walling JG, Wing RA, Jiang J, Chen M., 2018 Assessing genome assembly quality using the LTR Assembly Index (LAI)., Ou S, Chen J, Jiang N., 2018 Tracking the genome-wide outcomes of a transposable element burst over decades of amplification., Lu L, Chen J, Robb SMC, Okumoto Y, Stajich JE, Wessler SR., 2017 Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution., Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, et al., 2013 Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes., Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, et al., 2009

Areas of Focus

Genomics of pest-host interactions
Genome structure and evolution
Sustainable pest control methods

Publications

Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet., Chen J, Liu Y, Liu M, Guo W, Wang Y, He Q, Chen W, Liao Y, Zhang W, Gao Y, Dong K, Ren R, Yang T, Zhang L, Qi M, Li Z, Zhao M, Wang H, Wang J, Qiao Z, Li H, Jiang Y, Liu G, Song X, Deng Y, Li H, Yan F, Dong Y, Li Q, Li T, Yang W, Cui J, Wang H, Zhou Y, Zhang X, Jia G, Lu P, Zhi H, Tang S, Diao X., 2023
A graph-based genome and pangenome variation of the model plant Setaria., He Q, Tang S, Zhi H, Chen J, Zhang J, Liang H, Alam O, Li H, Zhang H, Xing L, Li X, Zhang W, Wang H, Shi J, Du H, Wu H, Wang L, Yang P, Xing L, Yan H, Song Z, Liu J, Wang H, Tian X, Qiao Z, Feng G, Guo R, Zhu W, Ren Y, Hao H, Li M, Zhang A, Guo E, Yan F, Li Q, Liu Y, Tian B, Zhao X, Jia R, Feng B, Zhang J, Wei J, Lai J, Jia G, Purugganan M, Diao X., 2023
Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome., Sun Y, Liu Y, Shi J, Wang L, Liang C, Yang J, Chen J, Chen M., 2023
A lncRNA fine-tunes salicylic acid biosynthesis to balance plant immunity and growth., Liu N, Xu Z, Li Q, Cao Y, Yang D, Liu S, Wang X, Mi Y, Liu Y, Ding C, Liu Y, Li Y, Yuan Y, Gao G, Chen J, Qian W, Zhang X., 2022
SARS-CoV-2 RNAs are processed into 22-nt vsRNAs in Vero cells., Liu Y, Rao J, Mi Y, Chen L, Feng L, Li Q, Geng J, Yang X, Zhan X, Ren L, Chen J, Zhang X., 2022
Serial single-cell genomics reveals convergent subclonal evolution of resistance as patients with early-stage breast cancer progress on endocrine plus CDK4/6 therapy., Griffiths, J.I., Chen, J., Cosgrove, P.A., O’Dea, A., Sharma, P., Ma, C., Trivedi, M., Kalinsky, K., Wisinski, K.B., O’Regan, R., Makhoul, I., Spring, L.M., Bardia, A., Adler, F.R., Cohen, A.L., Chang, J.T., Khan, Q.J. & Bild, A.H., 2021
Genomic diversity generated by a transposable element burst in a rice recombinant inbred population., Chen J, Lu L, Robb SMC, Collin M, Okumoto Y, Stajich JE, Wessler SR., 2020
Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice., Chen J, Lu L, Benjamin J, Diaz S, Hancock CN, Stajich JE, et al., 2019
Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions., Liao Y, Zhang X, Li B, Liu T, Chen J, Bai Z, Wang M, Shi J, Walling JG, Wing RA, Jiang J, Chen M., 2018
Assessing genome assembly quality using the LTR Assembly Index (LAI)., Ou S, Chen J, Jiang N., 2018
Tracking the genome-wide outcomes of a transposable element burst over decades of amplification., Lu L, Chen J, Robb SMC, Okumoto Y, Stajich JE, Wessler SR., 2017
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution., Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, et al., 2013
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes., Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, et al., 2009

Genomics Pest Host Interaction Genome Structure Evolution Sustainable Control Methods

Yi-Bo Hu - Chinese Academy of Sciences

Li Ming - Chinese Academy of Sciences

Fu-Wen Wei - Chinese Academy of Sciences

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