Areas of Focus
- 害虫与宿主互作基因组学
- 基因组结构与进化
- 可持续病虫害防控方法
Work Experience
- 2013-2019 - 加州大学河滨分校 - 博士后研究
- 2017-2019 - 加州大学河滨分校 - 助理项目科学家
- 2019-2020 - 希望之城国家医疗中心 - 职员科学家
- 2020-至今 - 中国科学院动物研究所 - 研究组组长
Academic Background & Achievements
- 2004 - 学士学位: 西北农林科技大学
- 2006 - 生物化学与分子生物学硕士学位: 西北农林科技大学
- 2012 - 遗传学博士学位: 中国科学院遗传与发育生物学研究所
Publications
- Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet., Chen J, Liu Y, Liu M, Guo W, Wang Y, He Q, Chen W, Liao Y, Zhang W, Gao Y, Dong K, Ren R, Yang T, Zhang L, Qi M, Li Z, Zhao M, Wang H, Wang J, Qiao Z, Li H, Jiang Y, Liu G, Song X, Deng Y, Li H, Yan F, Dong Y, Li Q, Li T, Yang W, Cui J, Wang H, Zhou Y, Zhang X, Jia G, Lu P, Zhi H, Tang S, Diao X., 2023
- A graph-based genome and pangenome variation of the model plant Setaria., He Q, Tang S, Zhi H, Chen J, Zhang J, Liang H, Alam O, Li H, Zhang H, Xing L, Li X, Zhang W, Wang H, Shi J, Du H, Wu H, Wang L, Yang P, Xing L, Yan H, Song Z, Liu J, Wang H, Tian X, Qiao Z, Feng G, Guo R, Zhu W, Ren Y, Hao H, Li M, Zhang A, Guo E, Yan F, Li Q, Liu Y, Tian B, Zhao X, Jia R, Feng B, Zhang J, Wei J, Lai J, Jia G, Purugganan M, Diao X., 2023
- Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome., Sun Y, Liu Y, Shi J, Wang L, Liang C, Yang J, Chen J, Chen M., 2023
- A lncRNA fine-tunes salicylic acid biosynthesis to balance plant immunity and growth., Liu N, Xu Z, Li Q, Cao Y, Yang D, Liu S, Wang X, Mi Y, Liu Y, Ding C, Liu Y, Li Y, Yuan Y, Gao G, Chen J, Qian W, Zhang X., 2022
- SARS-CoV-2 RNAs are processed into 22-nt vsRNAs in Vero cells., Liu Y, Rao J, Mi Y, Chen L, Feng L, Li Q, Geng J, Yang X, Zhan X, Ren L, Chen J, Zhang X., 2022
- Serial single-cell genomics reveals convergent subclonal evolution of resistance as patients with early-stage breast cancer progress on endocrine plus CDK4/6 therapy., Griffiths, J.I., Chen, J., Cosgrove, P.A., O’Dea, A., Sharma, P., Ma, C., Trivedi, M., Kalinsky, K., Wisinski, K.B., O’Regan, R., Makhoul, I., Spring, L.M., Bardia, A., Adler, F.R., Cohen, A.L., Chang, J.T., Khan, Q.J. & Bild, A.H., 2021
- Genomic diversity generated by a transposable element burst in a rice recombinant inbred population., Chen J, Lu L, Robb SMC, Collin M, Okumoto Y, Stajich JE, Wessler SR., 2020
- Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice., Chen J, Lu L, Benjamin J, Diaz S, Hancock CN, Stajich JE, et al., 2019
- Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions., Liao Y, Zhang X, Li B, Liu T, Chen J, Bai Z, Wang M, Shi J, Walling JG, Wing RA, Jiang J, Chen M., 2018
- Assessing genome assembly quality using the LTR Assembly Index (LAI)., Ou S, Chen J, Jiang N., 2018
- Tracking the genome-wide outcomes of a transposable element burst over decades of amplification., Lu L, Chen J, Robb SMC, Okumoto Y, Stajich JE, Wessler SR., 2017
- Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution., Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, et al., 2013
- Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes., Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, et al., 2009