Professor | Xiaoyu Tu | Asia Growth Partners

Name	Xiaoyu Tu
Contact Information	xiaoyutu@sjtu.edu.cn
Language ability	Chinese, English
Province	Shanghai

Name

Xiaoyu Tu

Contact Information

xiaoyutu@sjtu.edu.cn

Language ability

Chinese, English

Province

Shanghai

University/Lab Affiliation and Title	Shanghai Jiao Tong University
Faculty	Agriculture and Biotechnology
Academic Background & Achievements	2015.11-2019.10 PhD: The Chinese University of Hong Kong Visiting Scholar at Boyce Thompson Institute, Cornell University
Work Experience	2021.09 - Present - Shanghai Jiao Tong University, Tenured Associate Professor, Group Leader, Doctoral Supervisor 2019.11-2021.08 - The Chinese University of Hong Kong / South China Botanical Garden, CAS, Postdoctoral Researcher 2018.05-2019.07 - Boyce Thompson Institute, Cornell University, Visiting Scholar
Awards	2024.01-2027.12 National Natural Science Foundation of China (32370247) 2023 Selected for Shanghai Jiao Tong University '2030 Plan' Class C Project 2022 Selected for Shanghai Overseas High-Level Talent Introduction Plan 2022.01-2024.12 National Natural Science Foundation of China Youth Project (32100438) 2021.09-2024.12 Shanghai Jiao Tong University Double First-Class Construction Project 2021 Selected for Guangdong Province 'Pearl River Talent Plan' (Postdoctoral Funding Project) 2021.07-2021.08 China Postdoctoral Science Foundation Special Grant (Station Middle) 2020.07-2021.08 China Postdoctoral Science Foundation Surface Grant

University/Lab Affiliation and Title

Shanghai Jiao Tong University

Faculty

Agriculture and Biotechnology

Academic Background & Achievements

2015.11-2019.10 PhD: The Chinese University of Hong Kong
Visiting Scholar at Boyce Thompson Institute, Cornell University

Work Experience

2021.09 - Present - Shanghai Jiao Tong University, Tenured Associate Professor, Group Leader, Doctoral Supervisor
2019.11-2021.08 - The Chinese University of Hong Kong / South China Botanical Garden, CAS, Postdoctoral Researcher
2018.05-2019.07 - Boyce Thompson Institute, Cornell University, Visiting Scholar

Awards

2024.01-2027.12 National Natural Science Foundation of China (32370247)
2023 Selected for Shanghai Jiao Tong University '2030 Plan' Class C Project
2022 Selected for Shanghai Overseas High-Level Talent Introduction Plan
2022.01-2024.12 National Natural Science Foundation of China Youth Project (32100438)
2021.09-2024.12 Shanghai Jiao Tong University Double First-Class Construction Project
2021 Selected for Guangdong Province 'Pearl River Talent Plan' (Postdoctoral Funding Project)
2021.07-2021.08 China Postdoctoral Science Foundation Special Grant (Station Middle)
2020.07-2021.08 China Postdoctoral Science Foundation Surface Grant

Areas of Focus	Plant Functional Genomics Epigenetic Regulation (Chromatin Accessibility and Three-dimensional Structure, Histone Post-translational Modifications, DNA Methylation) Genetic Regulation (Transcription Factor Regulatory Network Construction, Co-binding, Binding Footprints)
Publications	Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence, Tu, X., Ren, S., Shen, W., Li, J., Li, Y., Li, C., Li, Y., Zong, Z., Xie, W., Grierson, D., Fei, Z., Giovannoni, J., Li, P., Zhong, S., 2022 Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors, Tu, X., Mejía-Guerra, M.K., Valdes Franco, J.A., Tzeng, D., Chu, P., Shen, W., Wei, Y., Dai, X., Li, P., Buckler, E.S., Zhong, S., 2020 A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells, Tu, X., Marand, A.P., Schmitz, R.J., Zhong, S., 2022 Histone H2A monoubiquitination marks are targeted to specific sites by cohesin subunits in Arabidopsis, Zhang, Y., Ma, M., Liu, M., Sun, A., Zheng, X., Liu, K., Yin, C., Li, C., Jiang, C., Tu, X., Fang, Y., 2023 3D chromatin architecture of large plant genomes determined by local A/B compartments, Dong, P., Tu, X., Chu, P., Lü, P., Zhu, N., Grierson, D., Du, B., Li, P., Zhong, S., 2017 Tissue-specific Hi-C analyses of rice, foxtail millet and maize suggest non-canonical function of plant chromatin domains, Dong, P., Tu, X., Li, H., Zhang, J., Grierson, D., Li, P., Zhong, S., 2020 Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize, Dai, X., Tu, X., Du, B., Dong, P., Sun, S., Wang, X., Sun, J., Gang, L., Lu, T., Zhong, S., Li, P., 2022

Areas of Focus

Plant Functional Genomics
Epigenetic Regulation (Chromatin Accessibility and Three-dimensional Structure, Histone Post-translational Modifications, DNA Methylation)
Genetic Regulation (Transcription Factor Regulatory Network Construction, Co-binding, Binding Footprints)

Publications

Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence, Tu, X., Ren, S., Shen, W., Li, J., Li, Y., Li, C., Li, Y., Zong, Z., Xie, W., Grierson, D., Fei, Z., Giovannoni, J., Li, P., Zhong, S., 2022
Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors, Tu, X., Mejía-Guerra, M.K., Valdes Franco, J.A., Tzeng, D., Chu, P., Shen, W., Wei, Y., Dai, X., Li, P., Buckler, E.S., Zhong, S., 2020
A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells, Tu, X., Marand, A.P., Schmitz, R.J., Zhong, S., 2022
Histone H2A monoubiquitination marks are targeted to specific sites by cohesin subunits in Arabidopsis, Zhang, Y., Ma, M., Liu, M., Sun, A., Zheng, X., Liu, K., Yin, C., Li, C., Jiang, C., Tu, X., Fang, Y., 2023
3D chromatin architecture of large plant genomes determined by local A/B compartments, Dong, P., Tu, X., Chu, P., Lü, P., Zhu, N., Grierson, D., Du, B., Li, P., Zhong, S., 2017
Tissue-specific Hi-C analyses of rice, foxtail millet and maize suggest non-canonical function of plant chromatin domains, Dong, P., Tu, X., Li, H., Zhang, J., Grierson, D., Li, P., Zhong, S., 2020
Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize, Dai, X., Tu, X., Du, B., Dong, P., Sun, S., Wang, X., Sun, J., Gang, L., Lu, T., Zhong, S., Li, P., 2022

Plant Genomics Functional Genomics Epigenetics Chromatin Structure Histone Modification Dna Methylation Genetic Regulation Transcription Factors Co-Binding Binding Footprints

Hongbo Gao - Shanghai Jiao Tong University

Zhenfei Sun - Shanghai Jiao Tong University

Xiaofeng Cao - University of Chinese Academy of Sciences

View All

Personal Information

Academic Information

Research

Contact us

No account yet?

Personal Information

Academic Information

Research

Contact us