Professor | Ying Zhu | Asia Growth Partners

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Name	Ying Zhu
Contact Information	ying_zhu@fudan.edu.cn
Language ability	English, Chinese
Province	Shanghai

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Name

Ying Zhu

Contact Information

ying_zhu@fudan.edu.cn

Language ability

English, Chinese

Province

Shanghai

University/Lab Affiliation and Title	Fudan University
Faculty	Brain Science Research Institute
Academic Background & Achievements	2008 - Bachelor's degree in Biology: Tsinghua University 2014 - Ph.D. in Neurobiology: Yale University
Work Experience	2014-2017 - Postdoctoral Research: Yale University, Department of Biostatistics and Neurobiology 2017-2019 - Associate Research Scientist: Yale University 2019-present - Researcher: Fudan University, Institute of Brain Science

University/Lab Affiliation and Title

Fudan University

Faculty

Brain Science Research Institute

Academic Background & Achievements

2008 - Bachelor's degree in Biology: Tsinghua University
2014 - Ph.D. in Neurobiology: Yale University

Work Experience

2014-2017 - Postdoctoral Research: Yale University, Department of Biostatistics and Neurobiology
2017-2019 - Associate Research Scientist: Yale University
2019-present - Researcher: Fudan University, Institute of Brain Science

Areas of Focus	Gene decoding and computational biology related to brain development, evolution, and diseases Development of bioinformatics methods for high-throughput sequencing data; computational modeling of complex biological systems
Publications	Pianno: a probabilistic framework automating semantic annotation for spatial transcriptomics, Zhou Y, He W, Hou WZ, Zhu Y, 2024 CellGO: a novel deep learning-based framework and webserver for cell-type-specific gene function interpretation, Li P, Wei J, Zhu Y, 2023 MvPPT: a highly efficient and sensitive pathogenicity prediction tool for missense variants, Tong SY, Fan K, Zhou ZW, Liu LY, Zhang SQ, Fu Y, Wang GZ, Zhu Y, Yu YC, 2022 Spatio-temporal transcriptomic divergence across human and macaque brain development, Zhu Y, Sousa AMM, Gao T, Skarica M, Li M, Santpere G, Esteller-Cucala P, Juan D, Ferrández-Peral L, Gulden FO, Yang M, Miller DJ, Marques-Bonet T, Kawasawa YI, Zhao H, Sestan N, 2018 Molecular and cellular reorganization of neural circuits in the human lineage, Sousa AMM, Zhu Y, Raghanti MA, Kitchen RR, Onorati M, Tebbenkamp ATN, Stutz B, Meyer KA, Li M, Kawasawa YI, Liu F, Perez RG, Mele M, Carvalho T, Skarica M, Gulden FO, Pletikos M, Shibata A, Stephenson AR, Edles MK, Ely JJ, Elsworth JD, Horvath TL, Hof PR, Mane SM, Noonan JP, State MW, Lein ES, Knowles JA, Marques-Bonet T, Sherwood CC, Gerstein MB, Sestan N, 2017

Areas of Focus

Gene decoding and computational biology related to brain development, evolution, and diseases
Development of bioinformatics methods for high-throughput sequencing data; computational modeling of complex biological systems

Publications

Pianno: a probabilistic framework automating semantic annotation for spatial transcriptomics, Zhou Y, He W, Hou WZ, Zhu Y, 2024
CellGO: a novel deep learning-based framework and webserver for cell-type-specific gene function interpretation, Li P, Wei J, Zhu Y, 2023
MvPPT: a highly efficient and sensitive pathogenicity prediction tool for missense variants, Tong SY, Fan K, Zhou ZW, Liu LY, Zhang SQ, Fu Y, Wang GZ, Zhu Y, Yu YC, 2022
Spatio-temporal transcriptomic divergence across human and macaque brain development, Zhu Y, Sousa AMM, Gao T, Skarica M, Li M, Santpere G, Esteller-Cucala P, Juan D, Ferrández-Peral L, Gulden FO, Yang M, Miller DJ, Marques-Bonet T, Kawasawa YI, Zhao H, Sestan N, 2018
Molecular and cellular reorganization of neural circuits in the human lineage, Sousa AMM, Zhu Y, Raghanti MA, Kitchen RR, Onorati M, Tebbenkamp ATN, Stutz B, Meyer KA, Li M, Kawasawa YI, Liu F, Perez RG, Mele M, Carvalho T, Skarica M, Gulden FO, Pletikos M, Shibata A, Stephenson AR, Edles MK, Ely JJ, Elsworth JD, Horvath TL, Hof PR, Mane SM, Noonan JP, State MW, Lein ES, Knowles JA, Marques-Bonet T, Sherwood CC, Gerstein MB, Sestan N, 2017

Gene Decoding Computational Biology Brain Development Evolution Diseases Bioinformatics High-Throughput Sequencing Computational Modeling Biological Systems Neurobiology

Sheng Lihong - Fudan University

Tang Yiquan - Fudan University

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