2008-2012 Bachelor in Bioinformatics, Tongji University
2012-2017 PhD in Bioinformatics, Tongji University
Postdoctoral research at Tongji University and Dana-Farber Cancer Institute, Harvard University (2017-2020)
2020-present Professor at School of Life Sciences and Technology, Tongji University
Wu Rui Scholarship
Boxin Plan
Shanghai Science and Technology Rising Star
Tongji University Pursuit of Excellence Award
Research
Single-cell spatial multi-omics bioinformatics method development Epigenetic and metabolic reprogramming in cell identity transitions Aging and immune disease related cell identity transitions modeling and intervention
Proteogenomic characterization of small cell lung cancer identifies biological insights and subtype-specific therapeutic strategies, Liu Q, Zhang J, Guo C, Wang M, Wang C, et al., Zhang P, 2024
Cancer Cells Resistance to IFN-γ via Enhanced Double-Strand Break Repair Pathway, Han T, Wang X, Shi S, Zhang W, Wang J, Wu Q, Li Z, Fu J, Zheng R, Zhang J, Tang Q, Zhang P, Wang C, 2023
SCREE: a comprehensive pipeline for single-cell multi-modal CRISPR screen data processing and analysis, Wei H, Han T, Li T, Wu Q, Wang C, 2023
SELINA: Single-cell Assignment using Multiple-Adversarial Domain Adaptation Network with Large-scale References, Ren P, Wang C, 2023
Tumor microenvironment remodeling after neoadjuvant immunotherapy in non-small cell lung cancer revealed by single-cell RNA sequencing, Hu J, Zhang L, Xia H, Yan Y, Zhu X, Sun F, Sun L, Li S, Li D, Wang J, Han Y, Zhang J, Bian D, Yu H, Chen Y, Fan P, Ma Q, Jiang G, Wang C, Zhang P, 2023
Single-cell Dissection of Cervical Cancer Reveals Key Subsets of the Tumor Immune Microenvironment, Cao G, Yue J, Ruan Y, Han Y, Zhi Y, Lu J, Liu M, Xu X, Wang J, Gu Q, Wen X, Gao J, Kang J, Zhang Q, Wang C, Li F, 2023
TISCH2: expanded datasets and new tools for single-cell transcriptome analyses of the tumor microenvironment, Han Y, Wang Y, Dong X, Sun D, Liu Z, Yue J, Wang H, Li T, Wang C, 2023
HUSCH: an integrated single-cell transcriptome atlas for human tissue gene expression visualization and analyses, Shi X, Yu Z, Ren P, Dong X, Ding X, Song J, Zhang J, Li T, Wang C, 2023
Stage-specific H3K9me3 occupancy ensures retrotransposon silencing in human preimplantation embryos, Xu R, Li S, Wu Q, Li C, Jiang M, Guo L, Chen M, Yang L, Dong X, Wang H, Wang C, Liu X, Ou X, Gao S, 2022
STRIDE: accurately decomposing and integrating spatial transcriptomics using single-cell RNA sequencing, Sun D, Liu Z, Li T, Wu Q, Wang C, 2022
Single-cell Gene Regulation Network Inference by Large-scale Data Integration, Dong X, Tang K, Xu Y, Wei H, Han T, Wang C, 2022
Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information, Liu Z, Sun D, Wang C, 2022
Dynamic nucleosome organization after fertilization reveals regulatory factors for mouse zygotic genome activation, Wang C, Chen C, Liu X, Li C, Wu Q, Chen X, Yang L, Kou X, Zhao Y, Wang H, Gao Y, Zhang Y, Gao S, 2022
TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment, Sun D, Wang J, Han Y, Dong X, Zheng R, Ge J, Shi X, Wang B, Li Z, Ren P, Sun L, Yan Y, Zhang P, Zhang F, Li T, Wang C, 2021
Integrative analyses of single-cell transcriptome and regulome using MAESTRO, Wang C, Sun D, Huang X, Wan C, Li Z, Han Y, Qin Q, Fan J, Qiu X, Xie Y, Meyer CA, Brown M, Tang M, Long H, Liu T, Liu XS, 2020
Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development, Gao R, Wang C, Gao Y, Bai D, Liu X, Kou X, Zhao Y, Zang R, Liao Y, Jia Y, Chen J, Wang H, Wan X, Liu W, Zhang Y, Gao S, 2018
Inhibition of aberrant DNA re-methylation improves the development of nuclear transfer embryos, Liu X, Wang C, Liu W, Li J, Li C, Kou X, Chen J, Zhao Y, Gao H, Wang H, Zhang Y, Gao Y, Gao S, 2018
Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos, Liu X, Wang C, Liu W, Li J, Li C, Kou X, Chen J, Zhao Y, Gao H, Wang H, Zhang Y, Gao Y, Gao S, 2016
Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing, Liu W, Liu X, Wang C, Gao Y, Gao R, Kou X, Zhao Y, Li J, Wu Y, Xiu W, Wang S, Yin J, Liu W, Cai T, Wang H, Zhang Y, Gao S, 2016
