Professor | Qin Xu | Asia Growth Partners

Name	Qin Xu
Contact Information	xuqin523@sjtu.edu.cn
Language ability	English, Chinese
Province	Shanghai

Name

Qin Xu

Contact Information

xuqin523@sjtu.edu.cn

Language ability

English, Chinese

Province

Shanghai

University/Lab Affiliation and Title	Shanghai Jiao Tong University
Faculty	Life Sciences
Academic Background & Achievements	2001 Bachelor of Biology, Peking University 2008 PhD in Biology, University of Tennessee 2009 Master of Statistics, University of Tennessee
Work Experience	2010-2012 Postdoctoral Researcher, Molecular Biophysics Center, University of Tennessee/Oak Ridge National Laboratory 2013-present Associate Researcher, School of Life Sciences and Technology, Shanghai Jiao Tong University 2018-present Distinguished Researcher, Institute of Material Science and Technology, Zhejiang University Taizhou Institute 2019-present Researcher, Shanghai Jiao Tong University-Yale University Joint Center for Biostatistics and Data Science
Awards	2017.10 Taizhou City 'Top 500 Talents' Award

University/Lab Affiliation and Title

Shanghai Jiao Tong University

Faculty

Life Sciences

Academic Background & Achievements

2001 Bachelor of Biology, Peking University
2008 PhD in Biology, University of Tennessee
2009 Master of Statistics, University of Tennessee

Work Experience

2010-2012 Postdoctoral Researcher, Molecular Biophysics Center, University of Tennessee/Oak Ridge National Laboratory
2013-present Associate Researcher, School of Life Sciences and Technology, Shanghai Jiao Tong University
2018-present Distinguished Researcher, Institute of Material Science and Technology, Zhejiang University Taizhou Institute
2019-present Researcher, Shanghai Jiao Tong University-Yale University Joint Center for Biostatistics and Data Science

Awards

2017.10 Taizhou City 'Top 500 Talents' Award

Areas of Focus	Computational Structural Biology Biophysics Biostatistics
Publications	An Allosteric Regulation Mechanism of Arabidopsis Serine/Threonine Kinase 1 (SIK1) Through Phosphorylation, Junxi Mu, Jiali Zhou, Qingqiu Gong, Qin Xu, 2022 SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction, Yu-Fang Zhang, Xiangeng Wang, Aman Chandra Kaushik, Yanyi Chu, Xiaoqi Shan, Ming-Zhu Zhao, Qin Xu, Dong-Qing Wei, 2020 The disulfide bond between Cys22 and Cys27 in the protease domain modulate clotting activity of coagulation factor X, Fang Li, Changming Chen, Si-Ying Qu, Ming-Zhu Zhao, Xiaoling Xie, Xi Wu, Lei Li, Xuefeng Wang, Qiulan Ding, Qin Xu, Dong-Qing Wei, Wenman Wu, 2019 Theoretical Studies of Intracellular Concentration of Micro-organisms’ Metabolites, Hai-Feng Yang, Xiao-Nan Zhang, Yan Li, Yong-Hong Zhang, Qin Xu, Dong-Qing Wei, 2017 The dynamic binding of cholesterol to the multiple sites of C99: as revealed by coarse-grained and all-atom simulations, Cheng-Dong Li, Qin Xu, Ruo-Xu Gu, Jing Qu, Dong-Qing Wei, 2017 Passive Transmembrane Permeation Mechanisms of Monovalent Ions Explored by Molecular Dynamics Simulations, Hui-Yuan Zhang, Qin Xu, Yu-Kun Wang, Tang-Zhen Zhao, Dan Hu, Dong-Qing Wei, 2016 The Destabilization of Alzheimer's Aβ42 Protofibrils with a Novel Drug Candidate wgx-50 by Molecular Dynamics Simulations, Huai-Meng Fan, Ruo-Xu Gu, Yan-Jing Wang, Yun-Long Pi, Yong-Hong Zhang, Qin Xu, Dong-Qing Wei, 2015 Energy Triplets for Writing Epigenetic Marks: Insights from QM/MM Free-Energy Simulations of Protein Lysine Methyltransferases, Qin Xu, Yu-Zhuo Chu, Hao-Bo Guo, Jeremy C. Smith, Hong Guo, 2009 The Importance of Dynamics in Substrate-Assisted Catalysis and Specificity, Qin Xu, Haobo Guo, Alexander Wlodawer, Hong Guo, 2006 Origin of Tight Binding of a Near-Perfect Transition-State Analogue by Cytidine Deaminase: Implications for Enzyme Catalysis, Haobo Guo, Niny Rao, Qin Xu, Hong Guo, 2005

Areas of Focus

Computational Structural Biology
Biophysics
Biostatistics

Publications

An Allosteric Regulation Mechanism of Arabidopsis Serine/Threonine Kinase 1 (SIK1) Through Phosphorylation, Junxi Mu, Jiali Zhou, Qingqiu Gong, Qin Xu, 2022
SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction, Yu-Fang Zhang, Xiangeng Wang, Aman Chandra Kaushik, Yanyi Chu, Xiaoqi Shan, Ming-Zhu Zhao, Qin Xu, Dong-Qing Wei, 2020
The disulfide bond between Cys22 and Cys27 in the protease domain modulate clotting activity of coagulation factor X, Fang Li, Changming Chen, Si-Ying Qu, Ming-Zhu Zhao, Xiaoling Xie, Xi Wu, Lei Li, Xuefeng Wang, Qiulan Ding, Qin Xu, Dong-Qing Wei, Wenman Wu, 2019
Theoretical Studies of Intracellular Concentration of Micro-organisms’ Metabolites, Hai-Feng Yang, Xiao-Nan Zhang, Yan Li, Yong-Hong Zhang, Qin Xu, Dong-Qing Wei, 2017
The dynamic binding of cholesterol to the multiple sites of C99: as revealed by coarse-grained and all-atom simulations, Cheng-Dong Li, Qin Xu, Ruo-Xu Gu, Jing Qu, Dong-Qing Wei, 2017
Passive Transmembrane Permeation Mechanisms of Monovalent Ions Explored by Molecular Dynamics Simulations, Hui-Yuan Zhang, Qin Xu, Yu-Kun Wang, Tang-Zhen Zhao, Dan Hu, Dong-Qing Wei, 2016
The Destabilization of Alzheimer's Aβ42 Protofibrils with a Novel Drug Candidate wgx-50 by Molecular Dynamics Simulations, Huai-Meng Fan, Ruo-Xu Gu, Yan-Jing Wang, Yun-Long Pi, Yong-Hong Zhang, Qin Xu, Dong-Qing Wei, 2015
Energy Triplets for Writing Epigenetic Marks: Insights from QM/MM Free-Energy Simulations of Protein Lysine Methyltransferases, Qin Xu, Yu-Zhuo Chu, Hao-Bo Guo, Jeremy C. Smith, Hong Guo, 2009
The Importance of Dynamics in Substrate-Assisted Catalysis and Specificity, Qin Xu, Haobo Guo, Alexander Wlodawer, Hong Guo, 2006
Origin of Tight Binding of a Near-Perfect Transition-State Analogue by Cytidine Deaminase: Implications for Enzyme Catalysis, Haobo Guo, Niny Rao, Qin Xu, Hong Guo, 2005

Molecular Simulation Protein Complexes Catalytic Mechanisms Structure-Function Relationships Regulatory Principles Molecular Motion Water Molecules Charged Ions Phospholipids Artificial Intelligence

Qin Xu - Shanghai Jiao Tong University

View All

Personal Information

Academic Information

Research

Contact us

No account yet?

Personal Information

Academic Information

Research

Contact us