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Shunmin He
heshunmin@ibp.ac
Chinese, English
Beijing

Academic Information

University of Chinese Academy of Sciences
Life Sciences
  • 2010-2011: Postdoctoral Researcher, Harvard University
  • 2004-2009: Ph.D. in Bioinformatics, Institute of Biophysics, Chinese Academy of Sciences
  • 1997-2001: Bachelor's in Electronic Engineering, Nanjing University of Science and Technology
  • 2017/05 - Present: Researcher, Institute of Biophysics, Chinese Academy of Sciences; Executive Deputy Director, Health Big Data Research Center; Professor, School of Life Sciences, University of Chinese Academy of Sciences
  • 2009-2017: Associate Researcher, Institute of Zoology, Chinese Academy of Sciences
  • 2016/04-2016/07: Visiting Scholar, University of California, San Diego
  • 2001-2004: Software Engineer, NEC Electronics (China) Co., Ltd.

Research

Genomics and Multi-Omics Research
Non-Coding Gene Research
Single-Cell and Multi-Omics Research Related to Diseases
  • Adaptive Selection of Cis-regulatory Elements in the Han Chinese, Shuai Liu, Huaxia Luo, Peng Zhang, Yanyan Li, Di Hao, Sijia Zhang, Tingrui Song, Tao Xu, Shunmin He, 2024
  • Recent positive selection signatures reveal phenotypic evolution in the Han Chinese population, Huaxia Luo, Peng Zhang, Wanyu Zhang, Yu Zheng, Di Hao, Yirong Shi, Yiwei Niu, Tingrui Song, Yanyan Li, Shilei Zhao, Hua Chen, Tao Xu, Shunmin He, 2023
  • Noncoding RNA mutations in cancer, Honghong Zhou, Xinpei Hao, Peng Zhang, Shunmin He, 2023
  • Characterization of genome-wide STR variation in 6,487 human genomes, Yirong Shi, Yiwei Niu, Peng Zhang, Huaxia Luo, Shuai Liu, Sijia Zhang, Jiajia Wang, Yanyan Li, Xinyue Liu, Tingrui Song, Tao Xu, Shunmin He, 2023
  • NPInter v5.0: ncRNA interaction database in a new era, Yu Zheng, Huaxia Luo, Xueyi Teng, Xinpei Hao, Xiaoyu Yan, Yiheng Tang, Wanyu Zhang, Yuanxin Wang, Peng Zhang, Yanyan Li, Yi Zhao, Runsheng Chen, Shunmin He, 2023
  • Characterizing mobile element insertions in 5675 genomes, Yiwei Niu, Xueyi Teng, Honghong Zhou, Yirong Shi, Yanyan Li, Yiheng Tang, Peng Zhang, Huaxia Luo, Quan Kang, Tao Xu, Shunmin He, 2022
  • NyuWa Genome resource: A deep whole-genome sequencing-based variation profile and reference panel for the Chinese population, Peng Zhang, Huaxia Luo, Yanyan Li, You Wang, Jiajia Wang, Yu Zheng, Yiwei Niu, Yirong Shi, Honghong Zhou, Tingrui Song, Quan Kang, Han100K Initiative, Tao Xu, Shunmin He, 2021
  • piRBase: integrating piRNA annotation in all aspects, Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Zhiye Ying, Haopeng Yu, Yanyan Li, Yi Zhao, Xiaoxi Zeng, Shunmin He, Runsheng Chen, 2021
  • SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Tingrui Song, Huaxia Luo, Yajing Hao, Runsheng Chen, Peng Zhang, Shunmin He, 2021
  • Global profiling of RNA-binding protein target sites by LACE-seq, Ruibao Su, Li-Hua Fan, Changchang Cao, Lei Wang, Zongchang Du, Zhaokui Cai, Ying-Chun Ouyang, Yue Wang, Qian Zhou, Ligang Wu, Nan Zhang, Xiaoxiao Zhu, Wen-Long Lei, Hailian Zhao, Yong Tian, Shunmin He, Catherine C L Wong, Qing-Yuan Sun, Yuanchao Xue, 2021
  • Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022, CNCB-NGDC Members and Partners, 2021
  • Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division, Yajing Hao, Dongpeng Wang, Shuheng Wu, Xiao Li, Changwei Shao, Peng Zhang, Jia-Yu Chen, Do-Hwan Lim, Xiang-Dong Fu, Runsheng Chen, Shunmin He, 2020
  • NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants, Lianhe Zhao, Jiajia Wang, Yanyan Li, Tingrui Song, Yang Wu, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Dong Pei, Yu Zheng, Jianqin Huang, Mingqing Xu, Runsheng Chen, Yi Zhao, Shunmin He, 2020
  • RIC-seq for global in situ profiling of RNA-RNA spatial interactions, Zhaokui Cai, Changchang Cao, Lei Ji, Rong Ye, Di Wang, Cong Xia, Sui Wang, Zongchang Du, Naijing Hu, Xiaohua Yu, Juan Chen, Lei Wang, Xianguang Yang, Shunmin He, Yuanchao Xue, 2020
  • NPInter v4.0: An integrated database of ncRNA interactions, Xueye Teng, Xiaomin Chen, Hua Xue, Yiheng Tang, Peng Zhang, Quan Kang, Yajing Hao, Runsheng Chen, Yi Zhao, Shunmin He, 2020
  • 6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda, Shunmin He, Guoqiang Zhang, Jiajia Wang, Yaji Gao, Ruidi sun, Zhijie Cao, Zhenping Chen, Xiudeng Zheng, Jiao Yuan, Yuewan Luo, Xiaona Wang, Wenxin Zhang, Peng Zhang, Yi Zhao, Chuan He, Yi Tao, Qinmiao Sun, Dahua Chen, 2019
  • RNAcentral: a hub of information for non-coding RNA sequences, The RNAcentral Consortium, 2019
  • piRBase: a comprehensive database of piRNA sequences, Jiajia Wang, Peng Zhang, Yiping Lu, Yanyan Li, Yu Zheng, Yunchao Kan, Runsheng Chen, Shunmin He, 2019
  • The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations, Liang Chen, Jia-Yu Chen, Yi-Jou Huang, Ying Gu, Jinsong Qiu, Hao Qian, Changwei Shao, Xuan Zhang, Jing Hu, Hairi Li, Shunmin He, Yu Zhou, Omar Abdel-Wahab, Dong-Er Zhang, Xiang-Dong Fu, 2018
Keywords
Genomics Multi-Omics Chinese Population Genome Sequencing Genetic Variation Disease Association Precision Medicine Non-Coding Rna Functional Annotation Single-Cell Analysis
Related Professors
Chao Chen - Central South University
Area of Focus
Gene Expression | Psychiatric Diseases | Dna Methylation | Non-Coding Rna | Schizophrenia | Bipolar Disorder | Epilepsy | Autism | Alzheimer'S | Parkinson'S | Big Data | Multi-Omics | Artificial Intelligence | Machine Learning | Disease Biomarkers | Gene Networks | Health Data | Data Integration | Complex Diseases | Network Analysis | Phenomics | Brain Development | Neuropsychiatric Genetics | Disease Phenotypes | Genetic Disorders | Developmental Disorders | Mental Health | Brain Tissue | Genetic Variation | Molecular Function
Jingfa Xiao - University of Chinese Academy of Sciences
Area of Focus
Genomics | Bioinformatics | Big Data | Rna-Seq | Genome Analysis | Transcriptomics | Data Integration | Computational Biology | Genetic Variation | Precision Medicine
Zhaoli Ding - University of Chinese Academy of Sciences
Area of Focus
Dna | Genes | Genetic Variation | Genome Sequencing | Molecular Biology | Bioinformatics | Evolution | Genetic Disorders | Population Genetics | Genetic Engineering
View All
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