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Changning Liu
liuchangning@xtbg.ac.cn
Chinese, English
Yunnan
University of Chinese Academy of Sciences
Life Sciences
  • 2006-06--2007-01 Visiting Student: Harvard University Dana Farber Cancer Institute
  • 2002-09--2007-07 PhD: Institute of Computing Technology, Chinese Academy of Sciences
  • 1996-09--2000-07 Bachelor's: Wuhan University
  • 2014-11~Present - Chinese Academy of Sciences Xishuangbanna Tropical Botanical Garden - Researcher
  • 2011-01~2013-01 - University of Texas at Dallas - Visiting Scholar
  • 2010-10~2014-10 - Institute of Computing Technology, Chinese Academy of Sciences - Associate Researcher
  • 2007-07~2010-09 - Institute of Computing Technology, Chinese Academy of Sciences - Assistant Researcher
  • Chinese Academy of Sciences Lu Jiaxi Young Talent Award (2008)
  • Chinese Academy of Sciences President's Excellence Scholarship (2007)
  • Institute of Computing Technology Director's Scholarship (2006)
  • Graduate School of Chinese Academy of Sciences Excellent Graduate Scholarship (2003)
Bioinformatics
Non-coding genes
Biological complex networks
High-throughput sequencing data analysis
Molecular biology experiments
Functional genomics of non-model plants
Database design and development
Software and algorithm development
Molecular pathways of non-model plants
Functional genomics of medicinal and economic plants
  • GRAS transcription factor PINNATE-LIKE PENTAFOLIATA2 controls compound leaf morphogenesis in Medicago truncatula, Liangliang He, Ye Liu, Yawen Mao, Xinyuan Wu, Xiaoling Zheng, Weiyue Zhao, Xiaoyu Mo, Ruoruo Wang, Qinq Wu, Dongfa Wang, Youhan Li, Yuanfan Yang, Quanzi Bai, Xiaojia Zhang, Shaoli Zhou, Baolin Zhao, Changning Liu, Yu Liu, Million Tadege, Jianghua Chen, 2024
  • CRISPRlnc: a machine learning method for lncRNA-specific single-guide RNA design of CRISPR/Cas9 system., Zitian Yang, Zexin Zhang, Jing Li, Wen Chen, Changning Liu, 2024
  • EupDB: An integrative and comprehensive functional genomics data hub for Euphorbiaceae plants, Jiazhi Liu, Yan Li, Jing Li, Wen Chen, Bangzhen Pan, Aizhong Liu, ZengFu Xu, Wei Xu, Changning Liu, 2024
  • Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth, Jiang, Lihui, Yao, Baolin, Zhang, Xiaoyan, Wu, Lixia, Fu, Qijing, Zhao, Yiting, Cao, Yuxin, Zhu, Ruomeng, Lu, Xinqi, Huang, Wuying, Zhao, Jianping, Li, Kuixiu, Zhao, Shuanglu, Han, Li, Zhou, Xuan, Luo, Chongyu, Zhu, Haiyan, Yang, Jing, Huang, Huichuan, Zhu, Zhengge, He, Xiahong, Friml, Jiri, Zhang, Zhongkai, Liu, Changning, Du, Yunlong, 2023
  • The MIO1-MtKIX8 module regulates the organ size in Medicago truncatula., Mao, Yawen, Shaoli Zhou, JIng Yang, Jiangqi Wen, Dongfa Wang, Xuan Zhou, Xinyuan Wu, Liangliang He, Mingli Liu, Huan Wu, Liling Yang, Baolin Zhao, Million Tadege, Yu Liu, Changning Liu, Jianghua Chen, 2023
  • Epigenetic modifications: Allusive clues of lncRNA functions in plants, Wenjing Yang, Quanzi Bai, Yan Li, Jianghua Chen, Changning Liu, 2023
  • 橡胶树种子性状相关基因的预测与功能研究, 刘嘉智, 刘长宁, 2023
  • GCEN: An Easy-to-Use Toolkit for Gene Co-Expression Network Analysis and lncRNAs Annotation, Chen, Wen, Li, Jing, Huang, Shulan, Li, Xiaodeng, Zhang, Xuan, Hu, Xiang, Xiang, Shuanglin, Liu, Changning, 2022
  • Multidimensional Gene Regulatory Landscape of Motor Organ Pulvinus in the Model Legume Medicago truncatula, Bai, Quanzi, Yang, Wenjing, Qin, Guochen, Zhao, Baolin, He, Liangliang, Zhang, Xuan, Zhao, Weiyue, Zhou, Dian, Liu, Ye, Liu, Yu, He, Hua, Tadege, Million, Xiong, Yan, Liu, Changning, Chen, Jianghua, 2022
  • Genome-wide identification, classification and expression analysis of the JmjC domain-containing histone demethylase gene family in Jatropha curcas L., Wang, Jie, Jiang, Xiaoke, Bai, Hanrui, Liu, Changning, 2022
  • 紫花苜蓿基因编辑数据库(AlfalfaGEDB)的应用研究--以MsHB7和MsPALM1为例, 蒋晓可, 刘长宁, 2022
  • RNA-Seq analysis reveals the important co-expressed genes associated with polyphyllin biosynthesis during the developmental stages of Paris polyphylla, Gao, Xiaoyang, Su, Qixuan, Li, Jing, Yang, Wenjing, Yao, Baolin, Guo, Jiawei, Li, Shengying, Liu, Changning, 2022
  • Genome-Wide Identification and Analysis of Lbd Transcription Factor Genes in Jatropha curcas and Related Species, Qi Jin, Zitian Yang, Wenjing Yang, Xiaoyang Gao, Changning Liu, Noe FernandezPozo, M Gonzalo Claros, 2022
  • INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance, Zhao, Yiting, Wu, Lixia, Fu, Qijing, Wang, Dong, Li, Jing, Yao, Baolin, Yu, Si, Jiang, Li, Qian, Jie, Zhou, Xuan, Han, Li, Zhao, Shuanglu, Ma, Canrong, Zhang, Yanfang, Luo, Chongyu, Dong, Qian, Li, Saijie, Zhang, Lina, Jiang, Xi, Li, Youchun, Luo, Hao, Li, Kuixiu, Yang, Jing, Luo, Qiong, Li, Lichi, Peng, Sheng, Huang, Huichuan, Zuo, Zhili, Liu, Changning, Wang, Lei, Li, Chengyun, He, Xiahong, Friml, Jiri, Du, Yunlong, 2021
  • Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome, Jin, GuiHua, Zhou, YanLi, Yang, Hong, Hu, YanTing, Shi, Yong, Li, Ling, Siddique, Abu N, Liu, ChangNing, Zhu, AnDan, Zhang, ChengJun, Li, DeZhu, 2021
  • 花发育相关基因分子进化与花发育调控网络拓扑中心性的相关性研究, 张頔, 高晓阳, 张轩, 刘长宁, 2021
  • Data integration and evolutionary analysis of long non-coding RNAs in 25 flowering plants, Sang, Shiye, Chen, Wen, Zhang, Di, Zhang, Xuan, Yang, Wenjing, Liu, Changning, 2021
  • Extended mining of the oil biosynthesis pathway in biofuel plant Jatropha curcas by combined analysis of transcriptome and gene interactome data, Xuan Zhang, Jing Li, BangZhen Pan, Wen Chen, Maosheng Chen, Mingyong Tang, ZengFu Xu, Changning Liu, 2021
  • Editorial: Big Data and Machine Learning in Cancer Genomics, Chen, Lin, Li, Huimin, Xie, Longxiang, Zuo, Zhanjie, Tian, Liqing, Liu, Changning, Guo, Xiangqian, 2021
  • 植物长非编码RNA进化相关研究进展, 桑世叶, 任强, 吴霜寒, 刘长宁, 2020
  • 重楼属植物在线分类鉴定系统的设计与实现, 任强, 桑世叶, 刘长宁, 2020
  • Regulatory roles of long noncoding RNAs implicated in cancer hallmarks, Wang, Jun, Zhang, Xuan, Chen, Wen, Hu, Xiang, Li, Jing, Liu, Changning, 2020
  • Dynamic Expansion and Functional Evolutionary Profiles of Plant Conservative Gene Family SBP-Box in Twenty Two Flowering Plants and the Origin of miR156, Li, Jing, Gao, Xiaoyang, Zhang, Xuan, Liu, Changning, 2020
  • The computational approaches of lncRNA identification based on coding potential: Status quo and challenges, Li, Jing, Zhang, Xuan, Liu, Changning, 2020
  • Transcriptome analysis of Paris polyphylla var. yunnanensis illuminates the biosynthesis and accumulation of steroidal saponins in rhizomes and leaves, Gao, Xiaoyang, Zhang, Xuan, Chen, Wen, Li, Jing, Yang, Wenjing, Zhang, Xingwang, Li, Shengying, Liu, Changning, 2020
  • Coding or Noncoding, the Converging Concepts of RNAs, Li, Jing, Liu, Changning, 2019
  • CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs, Chen, Wen, Zhang, Guoqiang, Li, Jing, Zhang, Xuan, Huang, Shulan, Xiang, Shuanglin, Hu, Xiang, Liu, Changning, 2019
  • Regulatory roles of long non-coding RNAs implicated in cancer hallmarks, Liu Zhangning
Bioinformatics Non-Coding Genes Biological Networks High-Throughput Sequencing Molecular Biology Functional Genomics Database Design Software Development Algorithm Development Medicinal Plants

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