Areas of Focus
- Proteomics Bioinformatics
- Omics Data Statistics
- Bioinformatics Software and Database Development
Work Experience
- 2010-Present - Shanghai Jiao Tong University, Associate Professor to Professor in Bioinformatics and Biostatistics
Academic Background & Achievements
- 2007-2010 Postdoctoral Fellow: Department of Biomedical Informatics, Vanderbilt University
Publications
- PTMint database of experimentally verified PTM regulation on protein-protein interaction, Hong X, Li N, Lv J, Zhang Y, Li J, Zhang J, Chen HF, 2023
- Drug repurposing for cancer treatment through global propagation with a greedy algorithm in a multilayer network, Cheng X, Zhao W, Zhu M, Wang B, Wang X, Yang X, Huang Y, Tan M, Li J, 2021
- Integrative analysis of the 3D genome structure reveals that CTCF maintains the properties of mouse female germline stem cells, Tian GG, Zhao X, Hou C, Xie W, Li X, Wang Y, Wang L, Li H, Zhao X, Li J, Wu J, 2022
- A community-supported metaproteomic pipeline for improving peptide identifications in hydrothermal vent microbiota, Chang Y, Fan Q, Hou J, Zhang Y, Li J, 2021
- SPA: A Quantitation Strategy for MS Data in Patient-derived Xenograft Models, Cheng X, Qian L, Wang B, Tan M, Li J, 2021
- Integrative Proteomic Characterization of Human Lung Adenocarcinoma, Xu JY, Zhang C, Wang X, Zhai L, Ma Y, ..., Qian X, Wang Y, Li J, He F, Xiao T, Tan M, 2020
- CanProVar 2.0: An Updated Database of Human Cancer Proteome Variation, Zhang M, Wang B, Xu J, Wang X, Xie L, Zhang B, Li Y, Li J, 2017
- A bioinformatics workflow for variant peptide detection in shotgun proteomics, Li J, Su Z, Ma ZQ, Slebos RJ, Halvey P, Tabb DL, Liebler DC, Pao W, Zhang B, 2011
- Network-assisted protein identification and data interpretation in shotgun proteomics, Li J, Zimmerman LJ, Park BH, Tabb DL, Liebler DC, Zhang B, 2009
- Regulatory module network of basic/helix-loop-helix transcription factors in mouse brain, Li J, Liu ZJ, Pan YC, Liu Q, Fu X, Cooper NG, Li Y, Qiu M, Shi T, 2007
