Professor | Qiu Wu | Asia Growth Partners

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Name	Qiu Wu
Contact Information	qiu_wu@tongji.edu.cn
Language ability	Chinese, English
Province	Shanghai

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Name

Qiu Wu

Contact Information

qiu_wu@tongji.edu.cn

Language ability

Chinese, English

Province

Shanghai

University/Lab Affiliation and Title	Tongji University
Faculty	Life Sciences
Academic Background & Achievements	2013-2018 PhD in Biology: Tongji University 2009-2013 Bachelor in Plant Protection: Sichuan Agricultural University Published research in prestigious journals such as Cell Stem Cell and Nucleic Acids Research Received Shanghai Super Postdoctoral and other national grants
Work Experience	2023.05 - Present - Tongji University, School of Life Sciences and Technology, Assistant Professor 2018.09 - 2023.05 - Tongji University, School of Life Sciences and Technology, Postdoctoral Researcher 2014.07 - 2015.09 - Harvard University Dana-Farber Cancer Institute, Visiting Scholar
Awards	Shanghai Super Postdoctoral National Natural Science Foundation of China Young Scientist Fund Postdoctoral Surface Project

University/Lab Affiliation and Title

Tongji University

Faculty

Life Sciences

Academic Background & Achievements

2013-2018 PhD in Biology: Tongji University
2009-2013 Bachelor in Plant Protection: Sichuan Agricultural University
Published research in prestigious journals such as Cell Stem Cell and Nucleic Acids Research
Received Shanghai Super Postdoctoral and other national grants

Work Experience

2023.05 - Present - Tongji University, School of Life Sciences and Technology, Assistant Professor
2018.09 - 2023.05 - Tongji University, School of Life Sciences and Technology, Postdoctoral Researcher
2014.07 - 2015.09 - Harvard University Dana-Farber Cancer Institute, Visiting Scholar

Awards

Shanghai Super Postdoctoral
National Natural Science Foundation of China Young Scientist Fund
Postdoctoral Surface Project

Areas of Focus	Development of single-cell and spatial functional genomics technologies and computational methods Epigenetic regulation of immune diseases and aging
Publications	Stage-specific H3K9me3 occupancy ensures retrotransposon silencing in human pre-implantation embryos, Xu R, Li S, Wu Q, Li C, Jiang M, Guo L, Chen M, Yang L, Dong X, Wang H, Wang C#, Liu X#, Ou X#, Gao S#, 2022 STRIDE: accurately decomposing and integrating spatial transcriptomics using single-cell RNA sequencing, Sun D, Liu Z, Li T, Wu Q#, Wang C#, 2022 Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse, Mei S, Qin Q, Wu Q, Sun H, Zhen R, Zang C, Zhu M, Wu J, Shi X, Taing L, Liu T, Brown M, Meyer CA#, Liu XS#, 2016 ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline, Qin Q, Mei S, Wu Q, Sun H, Li L, Taing L, Chen S, Li F, Liu T, Zang C, Xu H, Chen Y, Meyer CA, Zhang Y, Brown M, Long HW#, Liu XS#, 2016 Cancer Cells Resistance to IFN-γ via Enhanced Double-Strand Break Repair Pathway, Han T, Wang X, Shi S, Zhang W, Wang J, Wu Q, Li Z, Fu J, Zheng R, Zhang J, Tang Q, Zhang P#, Wang C#, 2023 Dynamic nucleosome organization after fertilization reveals regulatory factors for mouse zygotic genome activation, Wang C, Chen C, Liu X, Li C, Wu Q, Chen X, Yang L, Kou X, Zhao Y, Wang H, Gao Y#, Zhang Y#, Gao S#, 2022 Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data, Qin Q, Fan J, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J#, Meyer CA#, Liu XS#, 2020 Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis, Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang XY#, Meyer CA#, Liu XS#, 2019 Estrogen-regulated feedback loop limits the efficacy of estrogen receptor–targeted breast cancer therapy, Xiao T, Li W, Wang X, Xu H, Yang J, Wu Q, Huang Y, Geradts J, Jiang P, Fei T, Chi D, Zang C, Liao Q, Rennhack J, Andrechek E, Li N, Detre S, Dowsett M, Jeselsohn R, Liu X#, Myles B#, 2018 Cistrome Cancer: a web resource for integrative gene regulation modeling in cancer, Mei S, Meyer CA, Zheng R, Qin Q, Wu Q, Jiang P, Li B, Shi X, Wang B, Fan J, Brown M, Zang C#, Liu XS#, 2017 Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing, Fei T, Chen Y, Xiao T, Li W, Cato L, Zhang P, Cotter MB, Bowden M, Lis RT, Zhao SG, Wu Q, Feng FY, Loda M, He HH, Liu XS#, Brown M#, 2017 Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles, Wang S, Zang C, Xiao T, Fan J, Mei S, Qin Q, Wu Q, Li XJ, Xu K, He HH, Brown M, Meyer CA#, Liu XS#, 2016 Sequence determinants of improved CRISPR sgRNA design, Xu H, Xiao T*, Chen CH, Meyer CA, Wu Q, Wu D, Cong L, Zhang F, Liu JS, Brown M#, Liu XS#, 2015

Areas of Focus

Development of single-cell and spatial functional genomics technologies and computational methods
Epigenetic regulation of immune diseases and aging

Publications

Stage-specific H3K9me3 occupancy ensures retrotransposon silencing in human pre-implantation embryos, Xu R*, Li S*, Wu Q*, Li C*, Jiang M*, Guo L, Chen M, Yang L, Dong X, Wang H, Wang C#, Liu X#, Ou X#, Gao S#, 2022
STRIDE: accurately decomposing and integrating spatial transcriptomics using single-cell RNA sequencing, Sun D, Liu Z, Li T, Wu Q#, Wang C#, 2022
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse, Mei S*, Qin Q*, Wu Q*, Sun H, Zhen R, Zang C, Zhu M, Wu J, Shi X, Taing L, Liu T, Brown M, Meyer CA#, Liu XS#, 2016
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline, Qin Q*, Mei S*, Wu Q*, Sun H, Li L, Taing L, Chen S, Li F, Liu T, Zang C, Xu H, Chen Y, Meyer CA, Zhang Y, Brown M, Long HW#, Liu XS#, 2016
Cancer Cells Resistance to IFN-γ via Enhanced Double-Strand Break Repair Pathway, Han T*, Wang X*, Shi S, Zhang W, Wang J, Wu Q, Li Z, Fu J, Zheng R, Zhang J, Tang Q, Zhang P#, Wang C#, 2023
Dynamic nucleosome organization after fertilization reveals regulatory factors for mouse zygotic genome activation, Wang C*, Chen C*, Liu X*, Li C*, Wu Q, Chen X, Yang L, Kou X, Zhao Y, Wang H, Gao Y#, Zhang Y#, Gao S#, 2022
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data, Qin Q*, Fan J*, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J#, Meyer CA#, Liu XS#, 2020
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis, Zheng R*, Wan C*, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang XY#, Meyer CA#, Liu XS#, 2019
Estrogen-regulated feedback loop limits the efficacy of estrogen receptor–targeted breast cancer therapy, Xiao T*, Li W*, Wang X, Xu H, Yang J, Wu Q, Huang Y, Geradts J, Jiang P, Fei T, Chi D, Zang C, Liao Q, Rennhack J, Andrechek E, Li N, Detre S, Dowsett M, Jeselsohn R, Liu X#, Myles B#, 2018
Cistrome Cancer: a web resource for integrative gene regulation modeling in cancer, Mei S*, Meyer CA*, Zheng R, Qin Q, Wu Q, Jiang P, Li B, Shi X, Wang B, Fan J, Brown M, Zang C#, Liu XS#, 2017
Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing, Fei T*, Chen Y*, Xiao T, Li W, Cato L, Zhang P, Cotter MB, Bowden M, Lis RT, Zhao SG, Wu Q, Feng FY, Loda M, He HH, Liu XS#, Brown M#, 2017
Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles, Wang S*, Zang C*, Xiao T, Fan J, Mei S, Qin Q, Wu Q, Li XJ, Xu K, He HH, Brown M, Meyer CA#, Liu XS#, 2016
Sequence determinants of improved CRISPR sgRNA design, Xu H*, Xiao T*, Chen CH, Meyer CA, Wu Q, Wu D, Cong L, Zhang F, Liu JS, Brown M#, Liu XS#, 2015

Single-Cell Spatial Genomics Functional Genomics Computational Methods Epigenetics Immune Diseases Aging Disease Mechanisms Gene Identification Complex Biological Systems

Yujun Hou - Tongji University

Fanglin Sun - Tongji University

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