国际期刊《Heliyon》、《Molecular Medicine Reports》、《International Journal of Genetics Frontiers》等杂志评审专家
Research
癌症演化组学大数据研究
Annotation of cell types (ACT): a convenient web server for cell type annotation, Quan, F., X. Liang, M. Cheng, H. Yang, K. Liu, S. He, S. Sun, M. Deng, Y. He, W. Liu, S. Wang, S. Zhao, L. Deng, X. Hou, X. Zhang, and Y. Xiao, 2023
Computational Quantification of Cancer Immunoediting, Liu, K., S. He, S. Sun, X. Zhang, Y. He, F. Quan, B. Pang, and Y. Xiao, 2023
Combined homologous recombination repair deficiency and immune activation analysis for predicting intensified responses of anthracycline, cyclophosphamide and taxane chemotherapy in triple-negative breast cancer, Liao, G., Z. Jiang, Y. Yang, C. Zhang, M. Jiang, J. Zhu, L. Xu, A. Xie, M. Yan, Y. Zhang, Y. Xiao, and X. Li, 2021
CellMarker: a manually curated resource of cell markers in human and mouse, Zhang X, Lan Y, Xu J, Quan F, Zhao E, Deng C, Luo T, Xu L, Liao G, Yan M, Ping Y, Li F, Shi A, Bai J, Zhao T, Li X, XiaoY, 2019
Revealing the contribution of somatic gene mutations to shaping tumor immune microenvironment, Xu L, Zhu S, Lan Y, Yan M, Jiang Z, Zhu J, Liao G, Ping Y, Xu J, Pang B, Zhang Y, Xiao Y, Li X, 2022
Dynamic regulatory networks of T cell trajectory dissect transcriptional control of T cell state transition, Yan M, Hu J, Yuan H, Xu L, Liao G, Jiang Z, Zhu J, Pang B, Ping Y, Zhang Y, Xiao Y, Li X, 2021
Systematical identification of cell-specificity of CTCF-gene binding based on epigenetic modifications, Wu J, Zhang L, Song Q, Yu L, Wang S, Zhang B, Wang W, Xia P, Chen X, Xiao Y, Xu C, 2021
Dissecting the Functional Mechanisms of Somatic Copy-Number Alterations Based on Dysregulated ceRNA Networks across Cancers, Ping Y, Zhou Y, Hu J, Pang L, Xu C, Xiao Y, 2020
Combination of multiple tumor-infiltrating immune cells predicts clinical outcome in colon cancer, Zhang X, Quan F, Xu J, Xiao Y, Li X, Li Y, 2020
LncTarD: a manually-curated database of experimentally-supported functional lncRNA-target regulations in human diseases, Zhao H, Shi J, Zhang Y, Xie A, Yu L, Zhang C, Lei J, Xu H, Leng Z, Li T, Huang W, Lin S, Wang L, Xiao Y, Li X, 2020
Breast cancer prognosis signature: linking risk stratification to disease subtypes, Yu F, Quan F, Xu J, Zhang Y, Xie Y, Zhang J, Lan Y, Yuan H, Zhang H, Cheng S, Xiao Y, Li X, 2019
Identifying Cancer Driver lncRNAs Bridged by Functional Effectors through Integrating Multi-omics Data in Human Cancers, Zhang Y, Liao G, Bai J, Zhang X, Xu L, Deng C, Yan M, Xie A, Luo T, Long Z, Xiao Y, Li X, 2019
Sex difference of mutation clonality in diffuse glioma evolution, Zhang H, Liao J, Zhang X, Zhao E, Liang X, Luo S, Shi J, Yu F, Xu J, Shen W, Li Y, Xiao Y, Li X, 2019
Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability, Deng Y, Luo S, Deng C, Luo T, Yin W, Zhang H, Zhang Y, Zhang X, Lan Y, Ping Y, Xiao Y, Li X, 2019
CancerSEA: a cancer single-cell state atlas, Yuan H, Yan M, Zhang G, Liu W, Deng C, Liao G, Xu L, Luo T, Yan H, Long Z, Shi A, Zhao T, Xiao Y, Li X, 2019
TIP: A Web Server for Resolving Tumor Immunophenotype Profiling, Xu L, Deng C, Pang B, Zhang X, Liu W, Liao G, Yuan H, Cheng P, Li F, Long Z, Yan M, Zhao T, Xiao Y, Li X, 2018
Capturing functional long non-coding RNAs through integrating large-scale causal relations from gene perturbation experiments, Xu J, Shi A, Long Z, Xu L, Liao G, Deng C, Yan M, Xie A, Luo T, Huang J, Xiao Y, Li X, 2018
SEECancer: a resource for somatic events in evolution of cancer genome, Zhang H, Luo S, Zhang X, Liao J, Quan F, Zhao E, Zhou C, Yu F, Yin W, Zhang Y, Xiao Y, Li X, 2018
DiseaseEnhancer: a resource of human disease-associated enhancer catalog, Zhang G, Shi J, Zhu S, Lan Y, Xu L, Yuan H, Liao G, Liu X, Zhang Y, Xiao Y, Li X, 2018
GFI1 downregulation promotes inflammation-linked metastasis of colorectal cancer, Xing W, Xiao Y, Lu X, Zhu H, He X, Huang W, Lopez ES, Wong J, Ju H, Tian L, Zhang F, Xu H, Wang SD, Li X, Karin M, Ren H, 2017
A comprehensive overview of lncRNA annotation resources, Xu J, Bai J, Zhang X, Lv Y, Gong Y, Liu L, Zhao H, Yu F, Ping Y, Zhang G, Lan Y, Xiao Y, Li X, 2017
Cooperative genomic alteration network reveals molecular classification across 12 major cancer types, Zhang H, Deng Y, Zhang Y, Ping Y, Zhao H, Pang L, Zhang X, Wang L, Xu C, Xiao Y, Li X, 2017
Identifying dysfunctional miRNA-mRNA regulatory modules by inverse activation, cofunction, and high interconnection of target genes: a case study of glioblastoma, Xiao, Y., Y. Ping, H. Fan, C. Xu, J. Guan, H. Zhao, Y. Li, Y. Lv, Y. Jin, L. Wang, and X. Li, 2013
Prioritizing cancer-related key miRNA-target interactions by integrative genomics, Xiao, Y., J. Guan, Y. Ping, C. Xu, T. Huang, H. Zhao, H. Fan, Y. Li, Y. Lv, T. Zhao, Y. Dong, H. Ren, and X. Li, 2012
Identifying core gene modules in glioblastoma based on multilayer factor-mediated dysfunctional regulatory networks through integrating multi-dimensional genomic data, Ping, Y., Y. Deng, L. Wang, H. Zhang, Y. Zhang, C. Xu, H. Zhao, H. Fan, F. Yu, Y. Xiao, and X. Li, 2015
