Professor | 马亮 | 数字化转型顾问

	Upload Avatar (500 x 500)
Name	马亮
Contact Information	maliang@ioz.ac.cn
Language ability	中文, 英文
Province	北京

Upload Avatar (500 x 500)

Name

马亮

Contact Information

maliang@ioz.ac.cn

Language ability

中文, 英文

Province

北京

University/Lab Affiliation and Title	中国科学院
Faculty	Institute of Zoology
Academic Background & Achievements	2015 - 博士: 中国科学院数学与系统科学研究院
Work Experience	2015-2019 - 中国科学院北京基因组研究所助理研究员 2019-2023 - 中国科学院动物研究所助理研究员 2023-至今 - 中国科学院动物研究所副研究员

University/Lab Affiliation and Title

中国科学院

Faculty

Institute of Zoology

Academic Background & Achievements

2015 - 博士: 中国科学院数学与系统科学研究院

Work Experience

2015-2019 - 中国科学院北京基因组研究所助理研究员
2019-2023 - 中国科学院动物研究所助理研究员
2023-至今 - 中国科学院动物研究所副研究员

Areas of Focus	计算生物学生物信息学
Publications	SONAR enables cell type deconvolution with spatially weighted Poisson-Gamma model for spatial transcriptomics., Liu, Z., Wu, D., Zhai, W., Ma, L., 2023 Population genomic analysis reveals distinct demographics and recent adaptation in the black flying fox (Pteropus alecto)., He, H., Yang, H., Foo, R., Chan, W., Zhu, F., Liu, Y., Zhou, X., Ma, L., Wang, L.F. and Zhai, W., 2023 RobustTree: An adaptive, robust PCA algorithm for embedded tree structure recovery from single-cell sequencing data., Chen, Z., Zhang, B., Gong, F., Wan, L., Ma, L., 2023 BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data., Chen, Z., Gong, F., Wan, L. and Ma, L., 2022 DecOT: Bulk Deconvolution With Optimal Transport Loss Using a Single-Cell Reference., Liu, G., Liu, X. and Ma, L., 2022 Predicting Egg Passage Adaptations to Design Better Vaccines for the H3N2 Influenza Virus., Liu, Y., Chen, H., Duan, W., Zhang, X., He, X., Nielsen, R., Ma, L.* & Zhai, W., 2022 RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data., Chen, Z., Gong, F., Wan, L., and Ma, L., 2020 NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data., Xiong, J., Gong, F., Wan, L. and Ma, L., 2020 Epidemiology characteristics of the clonal complexes of Mycobacterium tuberculosis Lineage 4 in China., Ni, X., Zhu, C., Li, Q., Jiang, H., Liu, J., Chen, Z., He, L., Jia, J., Zhang, Z., Ma, L. and Li, W., 2020 Statistical test of structured continuous trees based on discordance matrix., Bai, X., Ma, L. and Wan, L., 2019 DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data., Chen, Z., An, S., Bai, X., Gong, F., Ma, L. and Wan, L., 2019 TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data., An, S., Ma, L. and Wan, L., 2019 Whole genome analyses of Chinese population and de novo assembly of a northern Han genome., Du, Z., Ma, L., Qu, H., Chen, W., ..., Xiao, J. and Zeng C., 2019 Multi-scale analysis of schizophrenia risk genes, brain structure, and clinical symptoms reveals integrative clues for subtyping schizophrenia patients., Ma, L., Rolls, E.T., Liu, X., Liu, Y., Jiao, Z., Wang, Y., Gong, W., Ma, Z., Gong, F. and Wan, L., 2019 AIM-SNPtag: A computationally efficient approach for developing ancestry-informative SNP panels., Zhao, S., Shi, C.M., Ma, L., Liu, Q., Liu, Y., Wu, F., Chi, L. and Chen, H., 2019 A branch point on differentiation trajectory is the bifurcating event revealed by dynamical network biomarker analysis of single-cell data., Chen, Z., Bai, X., Ma, L., Wang, X., Liu, X., Liu, Y., Chen, L.* and Wan, L., 2018 Inferring Chinese surnames with Y-STR profiles., Shi, C.M., Li, C., Ma, L., Chi, L., Zhao, J., Yuan, W., Zhou, Z., Yan, J.W. and Chen, H., 2018 Mycobacterium tuberculosis lineage distribution in Xinjiang and Gansu Provinces, China., Chen, H., He, L., Huang, H., Shi, C., Ni, X., Dai, G., Ma, L. and Li, W.*, 2017 Statistical measures of genetic differentiation of populations: Rationales, history and current states., Ma, L., Ji, Y.J. and Zhang, D.X., 2015 Factors affecting mito-nuclear codon usage interactions in the OXPHOS system of Drosophila melanogaster., Sun, Z., Ma, L., Murphy, R.W., Zhang, X. and Huang, D., 2008

Areas of Focus

计算生物学
生物信息学

Publications

SONAR enables cell type deconvolution with spatially weighted Poisson-Gamma model for spatial transcriptomics., Liu, Z., Wu, D., Zhai, W.*, Ma, L.*, 2023
Population genomic analysis reveals distinct demographics and recent adaptation in the black flying fox (Pteropus alecto)., He, H., Yang, H., Foo, R., Chan, W., Zhu, F., Liu, Y., Zhou, X., Ma, L.*, Wang, L.F.* and Zhai, W.*, 2023
RobustTree: An adaptive, robust PCA algorithm for embedded tree structure recovery from single-cell sequencing data., Chen, Z., Zhang, B., Gong, F., Wan, L.*, Ma, L.*, 2023
BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data., Chen, Z., Gong, F., Wan, L.* and Ma, L.*, 2022
DecOT: Bulk Deconvolution With Optimal Transport Loss Using a Single-Cell Reference., Liu, G., Liu, X.* and Ma, L.*, 2022
Predicting Egg Passage Adaptations to Design Better Vaccines for the H3N2 Influenza Virus., Liu, Y., Chen, H., Duan, W., Zhang, X., He, X., Nielsen, R.*, Ma, L.* & Zhai, W.*, 2022
RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data., Chen, Z., Gong, F., Wan, L.*, and Ma, L.*, 2020
NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data., Xiong, J., Gong, F., Wan, L.* and Ma, L.*, 2020
Epidemiology characteristics of the clonal complexes of Mycobacterium tuberculosis Lineage 4 in China., Ni, X., Zhu, C., Li, Q., Jiang, H., Liu, J., Chen, Z., He, L., Jia, J., Zhang, Z., Ma, L.* and Li, W.*, 2020
Statistical test of structured continuous trees based on discordance matrix., Bai, X., Ma, L.* and Wan, L.*, 2019
DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data., Chen, Z., An, S., Bai, X., Gong, F., Ma, L.* and Wan, L.*, 2019
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data., An, S., Ma, L.* and Wan, L.*, 2019
Whole genome analyses of Chinese population and de novo assembly of a northern Han genome., Du, Z., Ma, L., Qu, H., Chen, W., ..., Xiao, J.* and Zeng C.*, 2019
Multi-scale analysis of schizophrenia risk genes, brain structure, and clinical symptoms reveals integrative clues for subtyping schizophrenia patients., Ma, L., Rolls, E.T., Liu, X., Liu, Y., Jiao, Z., Wang, Y., Gong, W., Ma, Z., Gong, F. and Wan, L., 2019
AIM-SNPtag: A computationally efficient approach for developing ancestry-informative SNP panels., Zhao, S., Shi, C.M., Ma, L., Liu, Q., Liu, Y., Wu, F., Chi, L. and Chen, H., 2019
A branch point on differentiation trajectory is the bifurcating event revealed by dynamical network biomarker analysis of single-cell data., Chen, Z., Bai, X., Ma, L.*, Wang, X., Liu, X., Liu, Y., Chen, L.* and Wan, L.*, 2018
Inferring Chinese surnames with Y-STR profiles., Shi, C.M., Li, C., Ma, L., Chi, L., Zhao, J., Yuan, W., Zhou, Z., Yan, J.W.* and Chen, H.*, 2018
Mycobacterium tuberculosis lineage distribution in Xinjiang and Gansu Provinces, China., Chen, H., He, L., Huang, H., Shi, C., Ni, X., Dai, G., Ma, L.* and Li, W.*, 2017
Statistical measures of genetic differentiation of populations: Rationales, history and current states., Ma, L., Ji, Y.J. and Zhang, D.X., 2015
Factors affecting mito-nuclear codon usage interactions in the OXPHOS system of Drosophila melanogaster., Sun, Z., Ma, L., Murphy, R.W., Zhang, X. and Huang, D., 2008

分子进化群体遗传学单细胞分析空间组学数据建模分析方法基因型表型进化多样性

张德兴 - 中国科学院

翟巍巍 - 中国科学院

乔格侠 - 中国科学院

View All

Personal Information

Academic Information

Research

联系我们

还未创建账户?

Personal Information

Academic Information

Research

联系我们