GateView: A Multi-Omics Platform for Gene Feature Analysis of Virus Receptors within Human Normal Tissues and Tumors., Sun Y, Huang ZL, Chen WX, Zhang YF, Lei HT, Huang QJ, Lun ZR, Qu LH, Zheng LL, 2024
Integrative profiling of extrachromosomal circular DNA in placenta and maternal plasma provides insights into the biology of fetal growth restriction and reveals potential biomarkers., Lin M, Chen Y, Xia S, He Z, Yu X, Huang L, Lin S, Liang B, Huang Z, Mei S, Liu D, Zheng L, Luo Y, 2023
tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data., Hao-Tian Lei, Zhang-Hao Wang, Bin Li, Yang Sun, Shi-Qiang Mei, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng, 2023
SARS-CoV-2 causes a significant stress response mediated by small RNAs in the blood of COVID-19 patients., Liu X, Wen YZ, Huang ZL, Shen X, Wang JH, Luo YH, Chen WX, Lun ZR, Li HB, Qu LH, Shan H, Zheng LL, 2022
Integrated Analysis Reveals the Characteristics and Effects of SARS-CoV-2Maternal-Fetal Transmission., Huang Z, Xia S, Mei S, Wen Y, Liu J, Dong C, Chen W, Yu P, Qu L, Luo Y, Zheng L, 2022
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data., Jun-Hao Wang, Wen-Xin Chen, Shi-Qiang Mei, Yue-Dong Yang, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng, 2021
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs., Li Cai, Jia-jia Xuan, Qiao Lin, Jun-Hao Wang, Shun Liu, Fang-Zhou Xie, Ling-Ling Zheng, Bin Li, Liang-hu Qu, Jian-Hua Yang, 2021
ColorCells: A database of expression, classification and functions of lncRNAs in single cells., Ling-Ling Zheng, Jing-Hua Xiong, Wu-Jian Zheng, Jun-Hao Wang, Zi-Liang Huang, Zhi-Rong Chen, Xin-Yao Sun, Yi-Min Zheng, Ke-Ren Zhou, Bin Li, Shun Liu, Liang-Hu Qu, Jian-Hua Yang, 2020
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data., Fangzhou Xie, Shurong Liu, Junhao Wang, Jiajia Xuan, Xiaoqin Zhang, Lianghu Qu, Lingling Zheng, Jianhua Yang, 2020
走向国际前沿的中国RNA研究., 郑凌伶，戚益军，屈良鹄, 2019
“真凶密码—DNA指纹图谱制作思路”微课教案., 郑凌伶, 2019
Chinese RNA research leading to the international science and technology frontier., Ling-Ling Zheng, Yi-Jun Qi, Liang-Hu Qu, 2019
dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease., Ling-Ling Zheng, Ke-Ren Zhou, Shun Liu, Ding-Yao Zhang, Ze-Lin Wang, Zhi-Rong Chen, Jian-Hua Yang, Liang-Hu Qu, 2018
Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs., Ling-Ling Zheng, Kai-Wen Deng, An-Cheng Deng, Jie Wu, Jian-Hua Yang, Zhao-Rong Lun, Liang-Hu Qu, 2017
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers., Ling-Ling Zheng, Wei-Lin Xu, Shun Liu, Wen-Ju Sun, Jun-Hao Li, Jie Wu, Jian-Hua Yang, Liang-Hu Qu, 2016
deepBase v2.0: Identification, Expression, Evolution and Function of Small RNAs, LncRNAs and Circular RNAs from Deep-sequencing Data., Ling-Ling Zheng, Jun-Hao Li, Jie Wu, Wen-Ju Sun, Shun Liu, Ze-lin Wang, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu, 2015
Application of microRNA gene resources in the improvement of agronomic traits in rice., Ling-Ling Zheng and Liang-Hu Qu, 2015
Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei., Ling-Ling Zheng, Yan-Zi Wen, Jian-Hua Yang, Jian-You Liao, Peng Shao, Hui Xu, Hui Zhou, Jun-Zhi Wen, Zhao-Rong Lun, Francisco J Ayala, Liang-Hu Qu, 2013
Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei., Yan-Zi Wen, Ling-Ling Zheng, Jian-You Liao, Ming-Hui Wang, Yin Wei, Xue-Min Guo, Liang-Hu Qu, Francisco J. Ayala, Zhao-Rong Lun, 2011
Computational RNomics: structure identification and functional prediction of non-coding RNAs in silico., Ling-Ling Zheng and Liang-Hu Qu, 2010
Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Jun-Hao Li, Sun Liu, Ling-Ling Zheng, Jie Wu, Wen-Ju Sun, Ze-Lin Wang, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang, 2015
Computational Approaches to tRNA-Derived Small RNAs., Wei-Lin Xu, Ye Yang, Yi-Dan Wang, Liang-Hu Qu, Ling-Ling Zheng, 2017
Pseudogenes are not pseudo any more., Yan-Zi Wen, Ling-Ling Zheng, Liang-Hu Qu, Francisco J Ayala, Zhao-Rong Lun, 2012
Both endo-siRNAs and tRNA-derived small RNAs are involved in the differentiation of primitive eukaryote Giardia lamblia., Jian-You Liao, Yan-Hua Guo, Ling-Ling Zheng, Yan Li, Wen-Li Xu, Yu-Chan Zhang, Hui Zhou, Zhao-Rong Lun, Francisco Ayala, Liang-Hu Qu, 2014
Cancer in the parasitic protozoans Trypanosoma brucei and Toxoplasma gondii., Zhao-Rong Lun, De-Hua Lai, Yan-Zi Wen, Ling-Ling Zheng, Ji-Long Shen, Ting-Bo Yang, Wen-Liang Zhou, Liang-Hu Qu, Geoff Hide, Francisco J. Ayala, 2015
Analysis of the mitochondrial maxicircle of Trypanosoma lewisi, a neglected human pathogen., Ruo-Hong Lin, De-Hua Lai, Ling-Ling Zheng, Jie Wu, Julius Lukeš, Geoff Hide, Zao-Rong Lun, 2015
Rapid Birth-and-Death Evolution of Imprinted snoRNAs in the Prader-Willi Syndrome Locus: Implications for Neural Development in Euarchontoglires., Yi-Jun Zhang, Jian-Hua Yang, Qiao-Su Shi, Ling-Ling Zheng, Jun Liu, Hui Zhou, Hui Zhang, Liang-Hu Qu, 2014
ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data., Ke-Ren Zhou, Shun Liu, Wen-Ju Sun, Ling-Ling Zheng, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu, 2016
A Contig-Based Strategy for the Genome-Wide Discovery of MicroRNAs without Complete Genome Resources., Jun-Zhi Wen, Jian-You Liao, Ling-Ling Zheng, Hui Xu, Jian-Hua Yang, Dao-Gang Guan, Si-Min Zhang, Hui Zhou, Liang-Hu Qu, 2014
RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data., Jia-Jia Xuan, Wen-Ju Sun, Peng-Hui Lin, Ke-Ren Zhou, Shun Liu, Ling-Ling Zheng, Liang-Hu Qu, Jian-Hua Yang, 2017
Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation., Peng Shao, Jian-You Liao, Dao-Gang Guan, Jian-Hua Yang, Ling-Ling Zheng, Qing Jing, Hui Zhou, Liang-Hu Qu, 2012
A set of miRNAs that involve in the pathways of drug resistance and leukemic stem-cell differentiation is associated with the risk of relapse and glucocorticoid response in childhood ALL., Bo-Wei Han, Dan-Dan Feng, Zhi-Gang Li, Xue-Qun Luo, Hua Zhang, Xiao-Juan Li, Xing-Ju Zhang, Ling-Ling Zheng, Cheng-Wu Zeng, Kang-Yu Lin, Peng Zhang, Ling Xu, Yue-Qin Chen, 2011
